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Full Discussion: Exact match question
Top Forums UNIX for Dummies Questions & Answers Exact match question Post 302920472 by yuejian on Thursday 9th of October 2014 02:41:22 PM
Old 10-09-2014
Quote:
Originally Posted by RavinderSingh13
Hello yuejian,

Not sure if this fulfills your requirement could you please try following and let me know.

Code:
awk -F" |" 'FNR==NR{A[$1]=$1;next} ($2 in A){B=B?B ORS A[$2] OFS $4:A[$2] OFS $4} END{print B}' file2  file1 | sort -t'(' -k2,2n
OR
awk -F" |" 'FNR==NR{A[$1]=$1;next} ($2 in A){print A[$2] OFS $4}' file2 file1 | sort -t'(' -k2,2n

Thanks,
R. Singh
Hi Singh,

I tried your code. It only ranks the lines start with "GALGA" in file2. Actually all lines in file2 can have the corresponding mfe value in file1. Could you also take a look again? Thank you.

Yuejian

---------- Post updated at 02:41 PM ---------- Previous update was at 02:30 PM ----------

Quote:
Originally Posted by Akshay Hegde
You have asked for exact match not partial match I think, do you mean

NM_001159315 == NM_001159315.1 ?
I am sorry Akshay and Singh, I guess my expression lead you guys misunderstanding, my bad. This is what I meant: if any line in file2 partially match line in file1, list the mfe value in the parenthesis and rank it. So in most situations, the line in file2 has only one partially matched line in file1. However, some line in file2 has multiple partially matched lines in file1, I only need the exact match for mfe value under this multiple partial matching situation. Basically, I want all lines in file2 have the corresponding mfe value in file1 and rank them. Sorry to make you confused.

Yuejian

Last edited by yuejian; 10-09-2014 at 03:46 PM..
 

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h5diff(1)						      General Commands Manual							 h5diff(1)

NAME
h5diff - Compares two HDF5 files and reports the differences. SYNOPSIS
h5diff file1 file2 [OPTIONS] [object1 [object2 ] ] DESCRIPTION
h5diff is a command line tool that compares two HDF5 files, file1 and file2, and reports the differences between them. Optionally, h5diff will compare two objects within these files. If only one object, object1, is specified, h5diff will compare object1 in file1 with object1 in file2. In two objects, object1 and object2, are specified, h5diff will compare object1 in file1 with object2 in file2. These objects must be HDF5 datasets. object1 and object2 must be expressed as absolute paths from the respective file's root group. Additional information, with several sample cases, can be found in the document H5diff Examples. OPTIONS
file1 file2 The HDF5 files to be compared. -h Print all differences. -r Print only the names of objects that differ; do not print the differences. These objects may be HDF5 datasets, groups, or named datatypes. -n count Print difference up to count differences, then stop. count must be a positive integer. -d delta Print only differences that are greater than the limit delta. delta must be a positive number. The comparison criterion is whether the absolute value of the difference of two corresponding values is greater than delta (e.g., |a-b| > delta, where a is a value in file1 and b is a value in file2). -p relative Print only differences that are greater than a relative error. relative must be a positive number. The comparison criterion is whether the absolute value of the difference 1 and the ratio of two corresponding values is greater than relative (e.g., |1-(b/a)| > relative where a is a value in file1 and b is a value in file2). object1 object2 Specific object(s) within the files to be compared. EXAMPLES
The following h5diff call compares the object /a/b in file1 with the object /a/c in file2: h5diff file1 file2 /a/b /a/c This h5diff call compares the object /a/b in file1 with the same object in file2: h5diff file1 file2 /a/b And this h5diff call compares all objects in both files: h5diff file1 file2 SEE ALSO
h5dump(1), h5ls(1), h5repart(1), h5import(1), gif2h5(1), h52gif(1), h5perf(1) h5diff(1)
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