Not sure if this fulfills your requirement could you please try following and let me know.
Thanks,
R. Singh
Hi Singh,
I tried your code. It only ranks the lines start with "GALGA" in file2. Actually all lines in file2 can have the corresponding mfe value in file1. Could you also take a look again? Thank you.
Yuejian
---------- Post updated at 02:41 PM ---------- Previous update was at 02:30 PM ----------
Quote:
Originally Posted by Akshay Hegde
You have asked for exact match not partial match I think, do you mean
NM_001159315 == NM_001159315.1 ?
I am sorry Akshay and Singh, I guess my expression lead you guys misunderstanding, my bad. This is what I meant: if any line in file2 partially match line in file1, list the mfe value in the parenthesis and rank it. So in most situations, the line in file2 has only one partially matched line in file1. However, some line in file2 has multiple partially matched lines in file1, I only need the exact match for mfe value under this multiple partial matching situation. Basically, I want all lines in file2 have the corresponding mfe value in file1 and rank them. Sorry to make you confused.
Hi,
I have sentences like this:
$sent=
Protein modeling studies reveal that the RG-rich region is part of a three to four strand antiparallel beta-sheet, which in other RNA binding protein functions as a platform for nucleic acid interactions.
Heterogeneous nuclear ribonucleoparticle... (19 Replies)
I'm trying to find a exact word match but couldn't do it.
ABC
ABC_NE
Searching for ABC_NE tried
grep -w </ABC_NE/>
grep "^ABC_NE$"
but didn't worked , any awk variants would also help.
---------- Post updated at 08:40 AM ---------- Previous update was at 06:48 AM ----------
I... (2 Replies)
I am trying to match a pattern exactly in a shell script. I have tried two methods
awk '/\<mpath${CURR_MP}\>/{print $1 $2}' multipath
perl -ne '/\bmpath${CURR_MP}\b/ and print' /var/tmp/multipath
Both these methods require that I use the escape character. I am guessing that is why... (8 Replies)
Hi,
I have a file like follows
.
.
.
White.Jack.is.going.home
Black.Jack.is.going.home
Red.Jack.is.going.home
Jack.is.going.home
.
.
.
when I make:
cat <file> | grep -w "Jack.is.going.home"
it gives:
White.Jack.is.going.home
Black.Jack.is.going.home
Red.Jack.is.going.home... (4 Replies)
Hi friends,
i am using the following grep command for exact word match:
>echo "sachin#tendulkar" | grep -iw "sachin"
output: sachin#tendulkar
as we can see in the above example that its throwinng the exact match(which is not the case as the keyword is sachin and string is... (6 Replies)
file
11 2
12 6
13 7
114 6
011 7
if I'm searching for 11, output needed is
output:
11 2
011 7
Code: awk '$1 ~ /^11$/' file
I used the above to match exact, but it avoiding "011 7" line too, how to resolve this? (6 Replies)
Dear all, could you help me with following question. There are two datasets (below). I need to find match between BP values from data1 and data2, and add corresponding CM value from data2 into data1. if there is not exact match, the corresponding CM value should be calculated using interpolation.... (20 Replies)
Hello!
I have 2 files named tacs.tmp and tacDB.txt
tacs.tmp looks like this
0
10235647
102700
106800
107200
1105700
tacDB.txt looks like this
100100,Mitsubishi,G410,Handheld,,0,0,0
100200,Siemens,A53,Handheld,,0,0,0
100300,Sony Ericsson,TBD (AAB-1880030-BV),Handheld,,0,0,0... (2 Replies)
I just want to match "binutils1_test" only, and print the match line only
lyang001@lyang001-OptiPlex-9010:/tmp$ cat file
zbinutils1_test
bbinutils1_test
binutils1_test
w-binutils1_test
lyang001@lyang001-OptiPlex-9010:/tmp$ cat file |grep -w 'binutils1_test'
... (7 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
h5diff
h5diff(1) General Commands Manual h5diff(1)NAME
h5diff - Compares two HDF5 files and reports the differences.
SYNOPSIS
h5diff file1 file2 [OPTIONS] [object1 [object2 ] ]
DESCRIPTION
h5diff is a command line tool that compares two HDF5 files, file1 and file2, and reports the differences between them.
Optionally, h5diff will compare two objects within these files. If only one object, object1, is specified, h5diff will compare object1 in
file1 with object1 in file2. In two objects, object1 and object2, are specified, h5diff will compare object1 in file1 with object2 in
file2. These objects must be HDF5 datasets.
object1 and object2 must be expressed as absolute paths from the respective file's root group.
Additional information, with several sample cases, can be found in the document H5diff Examples.
OPTIONS
file1 file2
The HDF5 files to be compared.
-h Print all differences.
-r Print only the names of objects that differ; do not print the differences. These objects may be HDF5 datasets, groups, or named
datatypes.
-n count
Print difference up to count differences, then stop. count must be a positive integer.
-d delta
Print only differences that are greater than the limit delta. delta must be a positive number. The comparison criterion is whether
the absolute value of the difference of two corresponding values is greater than delta (e.g., |a-b| > delta, where a is a value in
file1 and b is a value in file2).
-p relative
Print only differences that are greater than a relative error. relative must be a positive number. The comparison criterion is
whether the absolute value of the difference 1 and the ratio of two corresponding values is greater than relative (e.g., |1-(b/a)| >
relative where a is a value in file1 and b is a value in file2).
object1 object2
Specific object(s) within the files to be compared.
EXAMPLES
The following h5diff call compares the object /a/b in file1 with the object /a/c in file2:
h5diff file1 file2 /a/b /a/c
This h5diff call compares the object /a/b in file1 with the same object in file2:
h5diff file1 file2 /a/b
And this h5diff call compares all objects in both files:
h5diff file1 file2
SEE ALSO h5dump(1), h5ls(1), h5repart(1), h5import(1), gif2h5(1), h52gif(1), h5perf(1)h5diff(1)