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Full Discussion: Bash syntax error
Top Forums Shell Programming and Scripting Bash syntax error Post 302917452 by Don Cragun on Tuesday 16th of September 2014 06:42:07 PM
Old 09-16-2014
Quote:
Originally Posted by chrisjorg
Code:
  set a=`grep ENDMDL my_docking.pdb | wc -l`
    set b=`expr $a - 2`
    csplit -k -s -n 3 -f my_docking. mydocking.pdb '/^ENDMDL/+1' '{'$b'}'
    foreach f ( mydocking.[0-9][0-9][0-9] )
      mv $f $f.pdb
    end

This is a code I know works.

The only thing I changed was to add a loop over the strings in file file.

So I think the problem is the way $line is passed through.

What's the difference between

Code:
$line, "$line" and '$line'

?
Sorry, but we don't believe you. The foreach is not valid bash syntax. Are you sure you didn't run the above code which a csh derivative instead of with bash?

And, yes, you also need to change single quotes in '$line' to double quotes "$line" throughout your script (as Corona688 suggested in his replacement for your foreach loop).
 

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foreach(n)						       Tcl Built-In Commands							foreach(n)

__________________________________________________________________________________________________________________________________________________

NAME
foreach - Iterate over all elements in one or more lists SYNOPSIS
foreach varname list body foreach varlist1 list1 ?varlist2 list2 ...? body _________________________________________________________________ DESCRIPTION
The foreach command implements a loop where the loop variable(s) take on values from one or more lists. In the simplest case there is one loop variable, varname, and one list, list, that is a list of values to assign to varname. The body argument is a Tcl script. For each element of list (in order from first to last), foreach assigns the contents of the element to varname as if the lindex command had been used to extract the element, then calls the Tcl interpreter to execute body. In the general case there can be more than one value list (e.g., list1 and list2), and each value list can be associated with a list of loop variables (e.g., varlist1 and varlist2). During each iteration of the loop the variables of each varlist are assigned consecutive values from the corresponding list. Values in each list are used in order from first to last, and each value is used exactly once. The total number of loop iterations is large enough to use up all the values from all the value lists. If a value list does not contain enough elements for each of its loop variables in each iteration, empty values are used for the missing elements. The break and continue statements may be invoked inside body, with the same effect as in the for command. Foreach returns an empty string. EXAMPLES
This loop prints every value in a list together with the square and cube of the value: set values {1 3 5 7 2 4 6 8} ;# Odd numbers first, for fun! puts "Value Square Cube" ;# Neat-looking header foreach x $values { ;# Now loop and print... puts " $x [expr {$x**2}] [expr {$x**3}]" } The following loop uses i and j as loop variables to iterate over pairs of elements of a single list. set x {} foreach {i j} {a b c d e f} { lappend x $j $i } # The value of x is "b a d c f e" # There are 3 iterations of the loop. The next loop uses i and j to iterate over two lists in parallel. set x {} foreach i {a b c} j {d e f g} { lappend x $i $j } # The value of x is "a d b e c f {} g" # There are 4 iterations of the loop. The two forms are combined in the following example. set x {} foreach i {a b c} {j k} {d e f g} { lappend x $i $j $k } # The value of x is "a d e b f g c {} {}" # There are 3 iterations of the loop. SEE ALSO
for(n), while(n), break(n), continue(n) KEYWORDS
foreach, iteration, list, looping Tcl foreach(n)
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