hello all
im trying to use in sun Solaris the information received from the top command
now i several machines that dont have install the top program so when im running the script im geting error
saying after im running this code :
set MemoryInfo = `top | grep Memory`
if (... (2 Replies)
i installed x windows redhat linux 9.0 in my pc.
but the problem is when i run cc command for c programme .....bash:cc: command not found printed ...........i set the path for bash ............with the help of PATH=$PATH....................still it is not working .........please guide me. (4 Replies)
Hi guys,
I do apologise if this question has been asked before. I am currently running Solaris 10 on a x86 architecture. Now, the problem I am having relates to the issuing of commands, for example if I am trying to find out the ipaddress of the machine I would issue the command 'ipconfig -a |... (2 Replies)
I'm using Terminal in MAC OS X, and new to this.
I don't know what happened to the path. I always get "command not found".
For example, this is some of what I get:
-bash: ls: command not found
-bash: touch: command not found
What should I do to return the terminal to normal?
... (0 Replies)
I have installed Solaris recently. I was doing "for file in *.c; ...." at the command prompt, it says for: command not found. I tried changing shells, but still wouldn't work.
Any ideas? (7 Replies)
I created a script that I need to run from time to time, but get this error message. To get it working again I run this command from time to time:
export PATH="$PATH:~/scripts"
I put all my automated scripts in the /scripts directory and would like to run my scripts from any directory... (5 Replies)
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
1. The problem statement, all variables and given/known data:
Trying to run script but everytime I do I get teh following error message
line 4:
I have attempted... (5 Replies)
I am running the export command within a view to use that value inside my build script. But while executing it it is saying "export command not found"
My code is as follows:
--------------------------
#!/bin/sh
user="test"
DIR="/bldtmp/"$user
VIEW="test.view1"
echo "TMPDIR before export... (4 Replies)
Hi Experts,
I am very much new to linux scripting, I am currently working on reducing my manual work and hence writing a script to automate few task.
I am running below command to snmpwalk the router..
snmpwalk -v 3 -u WANDL_SU -a MD5 -A vfipmpls -x DES -X VfIpMpLs -l authPriv... (19 Replies)
Hi all,
ar command not found on Solaris 10 version.
We can execute under ./ar command /usr/ccs/bin directory.
However, we want to execute ar command anywhere.
We add to /usr/ccs/bin entry under /etc/profile file shown as below.
umask 002
trap 2 3
... (2 Replies)
Discussion started by: ziosnim
2 Replies
LEARN ABOUT DEBIAN
rnaeffective
RNAEFFECTIVE(1) General Commands Manual RNAEFFECTIVE(1)NAME
RNAeffective - calculation of effective numbers of orthologous miRNA targets
SYNOPSIS
RNAeffective [-h] [-d frequency_file] [-f from,to] [-k sample_size] [-l mean,std] [-m max_target_length] [-n max_query_length] [-u
iloop_upper_limit] [-v bloop_upper_limit] [-s] [-t target_file] [-q query_file] [query]
DESCRIPTION
RNAeffective is a tool for determining the effective number of orthologous miRNA targets. This number can be used for the calculation of
more accurate joint p-values in multi-species analyses. RNAeffective searches a set of target sequences with random miRNAs that can be
given on the command line or otherwise generates random sequences according to given sample size, length distribution parameters and dinu-
cleotide frequencies. The empirical distribution of joint p-values is compared to the p-values themselves, and the effective number of
independent targets is the one that reduces the deviation between the two distributions.
OPTIONS -h Give a short summary of command line options.
-d frequency_file
Generate random sequences according to dinucleotide frequencies given in frequency_file. See example directory for example files.
-f from,to
Forces all structures to have a helix from position from to position to with respect to the query. The first base has position 1.
-k sample_size
Generate sample_size random sequences. Default value is 5000.
-l mean,std
Generate random sequences with a normal length distribution of mean mean and standard deviation std. Default values are 22 and 0,
respectively.
-m max_target_length
The maximum allowed length of a target sequence. The default value is 2000. This option only has an effect if a target file is given
with the -t option (see below).
-n max_query_length
The maximum allowed length of a query sequence. The default value is 30. This option only has an effect if a query file is given
with the -q option (see below).
-u iloop_upper_limit
The maximally allowed number of unpaired nucleotides in either side of an internal loop.
-v bloop_upper_limit
The maximally allowed number of unpaired nucleotides in a bulge loop.
-s Generate random sequences according to the dinucleotide distribution of given queries (either with the -q option or on command line.
If no -q is given, the last argument to RNAeffective is taken as a query). See -q option.
-q query_file
Without the -s option, each of the query sequences in query_file is subject to hybridisation with each of the targets (which are
from the target_file; see -t below). The sequences in the query_file have to be in FASTA format, ie. one line starting with a > and
directly followed by a name, then one or more following lines with the sequence itself. Each individual sequence line must not have
more than 1000 characters.
With the -s option, the query (or query file) dinucleotide distribution is counted, and random sequences are generated according to
this distribution.
If no -q is given, random sequences are generated as described above (see -d option).
-t target_file
See -q option above.
REFERENCES
The energy parameters are taken from:
Mathews DH, Sabina J, Zuker M, Turner DH. "Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary
structure" J Mol Biol., 288 (5), pp 911-940, 1999
VERSION
This man page documents version 2.0 of RNAeffective.
AUTHORS
Marc Rehmsmeier, Peter Steffen, Matthias Hoechsmann.
LIMITATIONS
Character dependent energy values are only defined for [acgtuACGTU]. All other characters lead to values of zero in these cases.
SEE ALSO
RNAhybrid, RNAcalibrate
RNAEFFECTIVE(1)