Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Join 2 files based on certain column Post 302916141 by Don Cragun on Sunday 7th of September 2014 03:36:41 PM
Old 09-07-2014
Quote:
Originally Posted by Franklin52
The sub function replaces only the field and preserves the field separators, $1="" or $1=x doesn't.
Yes. If there is a chance that the first field could contain any characters that are special in an extended regular expression, you would need to not only change: sub($1,x) to: $1=x, but also to change the last line to:
Code:
}' OFS=\| input2.txt input1.txt

or add a BEGIN clause to set OFS.

As long as the 1st field is always just numeric characters, your code is perfectly safe.
These 2 Users Gave Thanks to Don Cragun For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

"Join" or "Merge" more than 2 files into single output based on common key (column)

Hi All, I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations: 1. I am restrained to 2 input files only. 2. Only the "matched" fields are written out to the "matched" output file and... (1 Reply)
Discussion started by: Katabatic
1 Replies

2. UNIX for Dummies Questions & Answers

Join 2 files using first column

Hi, I'm trying to compare the first column of two files (tab or whitespace delimited, either way's fine, I`ve got both) and print the lines that are identical for the first column of both files. Something like this: File1 AAA 26 49 7 27 36 33 46 75 73 69 AAAAA 4 10 4 7 10 18 21... (2 Replies)
Discussion started by: vanesa1230
2 Replies

3. Shell Programming and Scripting

Join multiple files based on 1 common column

I have n files (for ex:64 files) with one similar column. Is it possible to combine them all based on that column ? file1 ax100 20 30 40 ax200 22 33 44 file2 ax100 10 20 40 ax200 12 13 44 file2 ax100 0 0 4 ax200 2 3 4 (9 Replies)
Discussion started by: quincyjones
9 Replies

4. Shell Programming and Scripting

join files based on a common field

Hi experts, Would you please help me with this? I have several files and I need to join the forth field of them based on the common first field. here's an example... first file: 280346 39.88 -75.08 547.8 280690 39.23 -74.83 538.7 280729 40.83 -75.08 499.2 280907 40.9 -74.4 507.8... (5 Replies)
Discussion started by: GoldenFire
5 Replies

5. Shell Programming and Scripting

join rows based on the column values

Hi, Please help me to convert the input file to a new one. input file: -------- 1231231231 3 A 4561223343 0 D 1231231231 1 A 1231231231 2 A 1231231231 4 D 7654343444 2 A 4561223343 1 D 4561223343 2 D the output should be: -------------------- 1231231231 3#1#2 A 4561223343 0 D... (3 Replies)
Discussion started by: vsachan
3 Replies

6. Shell Programming and Scripting

join two files based on one column

Hi All, I am trying to join to files based on one common column. Cat File1 ID HID Ab_1 23 Cd 45 df 22 Vv 33 Cat File2 ID pval Ab_1 0.3 Cd 10 Vv 0.0444 (3 Replies)
Discussion started by: newpro
3 Replies

7. UNIX for Dummies Questions & Answers

How to use the the join command to join multiple files by a common column

Hi, I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column). I want to write a script to join the files by the first common column so that in the... (5 Replies)
Discussion started by: evelibertine
5 Replies

8. UNIX for Dummies Questions & Answers

How to join 2 .txt files based on a common column?

Hi all, I'm trying to join two .txt file tab delimitated based on a common column. File 1 transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct comp1000201_c0_seq1 comp1000201_c0 337 183.51 0.00 0.00 0.00 0.00 comp1000297_c0_seq1 ... (1 Reply)
Discussion started by: alisrpp
1 Replies

9. UNIX for Dummies Questions & Answers

Join files by second column

I have file input file1 1/1/2013 A 553.0763397 96 16582 1/1/2013 B 459.8333588 195 11992 1/2/2013 A 844.2973022 306 19555 1/2/2013 B 833.9300537 457 20165 1/3/2013 A 563.6917419 396 13879 1/3/2013 B 632.0749969 169 ... (1 Reply)
Discussion started by: radius
1 Replies

10. Shell Programming and Scripting

Join columns across multiple lines in a Text based on common column using BASH

Hello, I have a file with 2 columns ( tableName , ColumnName) delimited by a Pipe like below . File is sorted by ColumnName. Table1|Column1 Table2|Column1 Table5|Column1 Table3|Column2 Table2|Column2 Table4|Column3 Table2|Column3 Table2|Column4 Table5|Column4 Table2|Column5 From... (6 Replies)
Discussion started by: nv186000
6 Replies
awk(1)							      General Commands Manual							    awk(1)

Name
       awk - pattern scanning and processing language

Syntax
       awk [-Fc] [-f prog] [-] [file...]

Description
       The  command scans each input file for lines that match any of a set of patterns specified in prog.  With each pattern in prog there can be
       an associated action that will be performed when a line of a file matches the pattern.  The set of patterns may appear literally  as  prog,
       or in a file specified as -f prog.

       Files  are  read  in  order;  if there are no files, the standard input is read.  The file name `-' means the standard input.  Each line is
       matched against the pattern portion of every pattern-action statement; the associated action is performed for each matched pattern.

       An input line is made up of fields separated by white space.  (This default can be changed by using FS, as described  below.)   The  fields
       are denoted $1, $2, ... ; $0 refers to the entire line.

       A pattern-action statement has the form

	    pattern { action }

       A missing { action } means print the line; a missing pattern always matches.

       An action is a sequence of statements.  A statement can be one of the following:

	    if ( conditional ) statement [ else statement ]
	    while ( conditional ) statement
	    for ( expression ; conditional ; expression ) statement
	    break
	    continue
	    { [ statement ] ... }
	    variable = expression
	    print [ expression-list ] [ >expression ]
	    printf format [ , expression-list ] [ >expression ]
	    next # skip remaining patterns on this input line
	    exit # skip the rest of the input

       Statements  are terminated by semicolons, new lines or right braces.  An empty expression-list stands for the whole line.  Expressions take
       on string or numeric values as appropriate, and are built using the operators +, -, *, /, %,  and concatenation	(indicated  by	a  blank).
       The  C operators ++, --, +=, -=, *=, /=, and %= are also available in expressions.  Variables may be scalars, array elements (denoted x[i])
       or fields.  Variables are initialized to the null string.  Array subscripts may be any string, not necessarily numeric; this allows  for  a
       form of associative memory.  String constants are quoted "...".

       The  print  statement prints its arguments on the standard output (or on a file if >file is present), separated by the current output field
       separator, and terminated by the output record separator.  The statement formats its expression list according to the format.  For  further
       information, see

       The  built-in  function	length	returns the length of its argument taken as a string, or of the whole line if no argument.  There are also
       built-in functions exp, log, sqrt, and int.  The last truncates its argument to an integer.  substr(s, m, n) returns the  n-character  sub-
       string  of  s that begins at position m.  The function sprintf(fmt, expr, expr, ...)  formats the expressions according to the format given
       by fmt and returns the resulting string.

       Patterns are arbitrary Boolean combinations (!, ||, &&, and parentheses)  of  regular  expressions  and	relational  expressions.   Regular
       expressions  must be surrounded by slashes and are as in egrep.	Isolated regular expressions in a pattern apply to the entire line.  Regu-
       lar expressions may also occur in relational expressions.

       A pattern may consist of two patterns separated by a comma; in this case, the action is performed for all lines between	an  occurrence	of
       the first pattern and the next occurrence of the second.

       A relational expression is one of the following:

	    expression matchop regular-expression
	    expression relop expression

       where a relop is any of the six relational operators in C, and a matchop is either ~ (for contains) or !~ (for does not contain).  A condi-
       tional is an arithmetic expression, a relational expression, or a Boolean combination of these.

       The special patterns BEGIN and END may be used to capture control before the first input line is read and after the last.   BEGIN  must	be
       the first pattern, END the last.

       A single character c may be used to separate the fields by starting the program with

	    BEGIN { FS = "c" }

       or by using the -Fc option.

       Other  variable	names  with special meanings include NF, the number of fields in the current record; NR, the ordinal number of the current
       record; FILENAME, the name of the current input file; OFS, the output field separator (default blank); ORS,  the  output  record  separator
       (default new line); and OFMT, the output format for numbers (default "%.6g").

Options
       -	 Used for standard input file.

       -Fc	 Sets interfield separator to named character.

       -fprog	 Uses prog file for patterns and actions.

Examples
       Print lines longer than 72 characters:
	    length > 72

       Print first two fields in opposite order:
	    { print $2, $1 }

       Add up first column, print sum and average:
		 { s += $1 }
	    END  { print "sum is", s, " average is", s/NR }

       Print fields in reverse order:
	    { for (i = NF; i > 0; --i) print $i }

       Print all lines between start/stop pairs:
	    /start/, /stop/

       Print all lines whose first field is different from previous one:
	    $1 != prev { print; prev = $1 }

Restrictions
       There  are  no explicit conversions between numbers and strings.  To force an expression to be treated as a number add 0 to it; to force it
       to be treated as a string concatenate "" to it.

See Also
       lex(1), sed(1)
       "Awk - A Pattern Scanning and Processing Language" ULTRIX Supplementary Documents Vol. II: Programmer

																	    awk(1)
All times are GMT -4. The time now is 01:00 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy