Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Join 2 files based on certain column Post 302916138 by Don Cragun on Sunday 7th of September 2014 02:36:55 PM
Old 09-07-2014
Reformattig Franklin52's code and adding comments:
Code:
awk -F\| '		# Set input field separator to "|".
fNR==FNR{		# For all lines in the 1st file given...
	i=$1		# Set i to the contents of the 1st field.
	sub($1,x)	# Substitute the 1st occurrence in the current line of
			# the contents of the 1st field with the contents of the
			# variable x.  Since x has not been set, the replaceent
			# string is an empty string.  This is dangerous if the
			# contents of the first field could contain any ERE
			# special characters.  I would have written this as:
			#	$1=""
			# or:	$1=x
	a[i]=$0		# Set a[i] to the contents of the modified current line
	next		# Skip remaining steps for this input line; start next
			# cycle.
}
$1 in a{print $0 a[$1]	# For all lines in the second file that have a 1st field
			# that matches the original first field in the 1st file,
			# print the current input line with the contents of the
			# corresponding line (except the 1st field) from the 1st
			# file added to the end of the line.
}' input2.txt input1.txt # Specify names of files to be processed.

Does this answer your questions?
This User Gave Thanks to Don Cragun For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

"Join" or "Merge" more than 2 files into single output based on common key (column)

Hi All, I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations: 1. I am restrained to 2 input files only. 2. Only the "matched" fields are written out to the "matched" output file and... (1 Reply)
Discussion started by: Katabatic
1 Replies

2. UNIX for Dummies Questions & Answers

Join 2 files using first column

Hi, I'm trying to compare the first column of two files (tab or whitespace delimited, either way's fine, I`ve got both) and print the lines that are identical for the first column of both files. Something like this: File1 AAA 26 49 7 27 36 33 46 75 73 69 AAAAA 4 10 4 7 10 18 21... (2 Replies)
Discussion started by: vanesa1230
2 Replies

3. Shell Programming and Scripting

Join multiple files based on 1 common column

I have n files (for ex:64 files) with one similar column. Is it possible to combine them all based on that column ? file1 ax100 20 30 40 ax200 22 33 44 file2 ax100 10 20 40 ax200 12 13 44 file2 ax100 0 0 4 ax200 2 3 4 (9 Replies)
Discussion started by: quincyjones
9 Replies

4. Shell Programming and Scripting

join files based on a common field

Hi experts, Would you please help me with this? I have several files and I need to join the forth field of them based on the common first field. here's an example... first file: 280346 39.88 -75.08 547.8 280690 39.23 -74.83 538.7 280729 40.83 -75.08 499.2 280907 40.9 -74.4 507.8... (5 Replies)
Discussion started by: GoldenFire
5 Replies

5. Shell Programming and Scripting

join rows based on the column values

Hi, Please help me to convert the input file to a new one. input file: -------- 1231231231 3 A 4561223343 0 D 1231231231 1 A 1231231231 2 A 1231231231 4 D 7654343444 2 A 4561223343 1 D 4561223343 2 D the output should be: -------------------- 1231231231 3#1#2 A 4561223343 0 D... (3 Replies)
Discussion started by: vsachan
3 Replies

6. Shell Programming and Scripting

join two files based on one column

Hi All, I am trying to join to files based on one common column. Cat File1 ID HID Ab_1 23 Cd 45 df 22 Vv 33 Cat File2 ID pval Ab_1 0.3 Cd 10 Vv 0.0444 (3 Replies)
Discussion started by: newpro
3 Replies

7. UNIX for Dummies Questions & Answers

How to use the the join command to join multiple files by a common column

Hi, I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column). I want to write a script to join the files by the first common column so that in the... (5 Replies)
Discussion started by: evelibertine
5 Replies

8. UNIX for Dummies Questions & Answers

How to join 2 .txt files based on a common column?

Hi all, I'm trying to join two .txt file tab delimitated based on a common column. File 1 transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct comp1000201_c0_seq1 comp1000201_c0 337 183.51 0.00 0.00 0.00 0.00 comp1000297_c0_seq1 ... (1 Reply)
Discussion started by: alisrpp
1 Replies

9. UNIX for Dummies Questions & Answers

Join files by second column

I have file input file1 1/1/2013 A 553.0763397 96 16582 1/1/2013 B 459.8333588 195 11992 1/2/2013 A 844.2973022 306 19555 1/2/2013 B 833.9300537 457 20165 1/3/2013 A 563.6917419 396 13879 1/3/2013 B 632.0749969 169 ... (1 Reply)
Discussion started by: radius
1 Replies

10. Shell Programming and Scripting

Join columns across multiple lines in a Text based on common column using BASH

Hello, I have a file with 2 columns ( tableName , ColumnName) delimited by a Pipe like below . File is sorted by ColumnName. Table1|Column1 Table2|Column1 Table5|Column1 Table3|Column2 Table2|Column2 Table4|Column3 Table2|Column3 Table2|Column4 Table5|Column4 Table2|Column5 From... (6 Replies)
Discussion started by: nv186000
6 Replies
join-dctrl(1)						      General Commands Manual						     join-dctrl(1)

NAME
join-dctrl - perform relational join on data in dctrl format SYNOPSIS
join-dctrl [ options ] filename filename join-dctrl --version join-dctrl --help DESCRIPTION
join-dctrl performs a relational join operation on data given to it in Debian control file format. A join field must be specified using either the switches -1 and -2 or the switch -j. Conceptually, the program creates all ordered pairs of records that can be formed by having a record from the first file as the first member of the pair and having a record from the second file as the second member of the pair; and then it deletes all such pairs where the join fields are not equal. Effectively, each of the input files is treated as a relational database table. Every input file must be in ascending order on its join field; this allows the program to work fast. The sort-dctrl(1) program can be used to make it so. OPTIONS
-1 field, --1st-join-field=field Specify the join field of the first input file. -2 field, --2nd-join-field=field Specify the join field of the second input file. -j field, --join-field=field Specify a common join field for all files. -a fileno, --unpairable-from=fileno Specify that unmatched paragraphs from the first (if 1 is given) or the second (if 2 is given) file are printed. -o fieldspec, --output-fields=fieldspec Specify which fields are included in the output. Fields are separated by commas (more than one -o option can be used, too). Each field is specified in the format fileno.field in which fileno is the ordinal number of the input file from which the field is drawn (either 1 or 2), and field gives the name of the field to use. As a special case, simple 0 can be used instead of fileno.field to refer to the common value of the join fields. The name of the field (not including the file number) is used in the output as the name of the field. However, a different name for output purposes can be specified by suffixing the field specification by a colon and the preferred visible name. For example, the option -o 0,1.Version:Old-Version,2.Version specifies that the first field in any output record should be the join field, the second field should be Old-Version drawing its data from the Version field of the first input file, and the third field should be Version drawing its data from the field with the same name in the second input file, and these are the only fields in an output record. If no -o option is given, all fields of all the records being joined are included in the output. -l level, --errorlevel=level Set log level to level. level is one of fatal, important, informational and debug, but the last may not be available, depending on the compile-time options. These categories are given here in order; every message that is emitted when fatal is in effect, will be emitted in the important error level, and so on. The default is important. -V, --version Print out version information. -C, --copying Print out the copyright license. This produces much output; be sure to redirect or pipe it somewhere (such as your favourite pager). -h, --help Print out a help summary. OPERANDS
join-dctrl will treat each file named on the command line as a relational database table. A file called - represents the program's stan- dard input stream. Currently, exactly two files must be named. STDIN
The standard input stream may be used as input as specified above in the OPERANDS section. INPUT FILES
All input to join-dctrl is in the format of a Debian control file. A Debian control (dctrl) file is a semistructured single-table database stored in a machine-parseable text file. Such a database consists of a set of records; each record is a mapping from field names to field content. Textually, records are separated by empty lines, while each field is encoded as one or more nonempty lines inside a record. A field starts with its name, followed by a colon, followed by the field content. The colon must reside on the first line of the field, and the first line must start with no whitespace. Subsequent lines, in contrast, always start with linear whitespace (one or more space or tab characters). Each input file must be in the ascending order of its join field. ENVIRONMENT VARIABLES
The standard locale environment, specifically its character set setting, affects the interpretation of input and output as character streams. ASYNCHRONOUS EVENTS
Standard UNIX signals have their usual meaning. STDOUT
All output is sent to the standard output stream. The output is in the format of a Debian control file, described above in the INPUT FILES section. The output will be in the ascending order of the join field, if that field is included in the output. OUTPUT FILES
There are no output files. EXIT STATUS
This utility exits with 0 when successful. It uses a nonzero exit code inconsistently when an error is noticed (this is a bug). CONSEQUENCES OF ERRORS
In case of errors in the input, the output will be partially or completely garbage. In case of errors in invocation, the program will refuse to function. EXAMPLES
Suppose that a file containing data about binary packages for the AMD64 architecture contained in the Debian squeeze (6.0) release, section main, is in the current directory and named Packages. Suppose that we are currently on a Debian system. Suppose further that the current directory does not contain files named stat and pkg. The following commands gives, for each package currently installed and available in Debian squeeze (6.0), its currently installed version (as Old-Version) and the version in squeeze (as New-Version): $ sort-dctrl -kPackage /var/lib/dpkg/status > stat $ sort-dctrl -kPackage Packages > pkg $ join-dctrl -j Package -o 0,1.Version:Old-Version,2.Version:New-Version stat pkg AUTHOR
The join-dctrl program and this manual page were written by Antti-Juhani Kaijanaho. SEE ALSO
grep-dctrl(1), sort-dctrl(1), tbl-dctrl(1) join-dctrl(1)
All times are GMT -4. The time now is 04:44 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy