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Top Forums UNIX for Dummies Questions & Answers Deleting unwanted text from a table Post 302915537 by Juan Gonzalez on Wednesday 3rd of September 2014 03:54:48 PM
Old 09-03-2014
Deleting unwanted text from a table

Hi everyone,

I have a microbial diversity table in the format ;k__kingdom; p__phylum, etc, somer rows have descriptions before the :k__ (like the af028349.1 below) is there a way I can get rid of this text (which is different every time) and keep all the other columns?

Thanks a bunch!
Code:
; k__bacteria; p__firmicutes; c__clostridia; o__clostridiales; f__lachnospiraceae; g__roseburia; s__roseburia spp.	171	78	11	117	99	43	98	79	119	48	254	6	15	10	60	10	16	81	31	58
af028349.1 clostridium fusiformis cm973 ; k__bacteria; p__firmicutes; c__clostridia; o__clostridiales; f__lachnospiraceae; g__clostridium;s__clostridium fusiformis cm973	82	67	8	30	143	23	99	29	43	186	186	36	87	21	32	20	5	18	21	305
; k__bacteria; p__firmicutes; c__clostridia; o__clostridiales; f__lachnospiraceae; g__coprococcus; s__coprococcus spp.	46	132	4	75	103	7	87	0	2	159	43	4	7	4	17	135	11	120	122	51
; k__bacteria; p__actinobacteria; c__coriobacteria; o__coriobacteriales; f__coriobacteriaceae; g__enterorhabdus; s__enterorhabdus spp.	73	25	151	39	20	23	55	17	75	57	25	110	12	151	132	56	73	66	37	47
; k__bacteria; p__proteobacteria; c__betaproteobacteria; o__burkholderiales; f__alcaligenaceae; g__parasutterella; s__parasutterella spp.	180	164	257	136	52	112	81	170	73	61	99	294	37	111	222	282	233	367	287	176


Last edited by vbe; 09-03-2014 at 05:22 PM.. Reason: code tags please
 

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ascii(5)						Standards, Environments, and Macros						  ascii(5)

NAME
ascii - map of ASCII character set SYNOPSIS
cat /usr/pub/ascii DESCRIPTION
/usr/pub/ascii is a map of the ASCII character set, to be printed as needed. It contains octal and hexadecimal values for each character. While not included in that file, a chart of decimal values is also shown here. Octal - Character 000 NUL 001 SOH 002 STX 003 ETX 004 EOT 005 ENQ 006 ACK 007 BEL 010 BS 011 HT 012 NL 013 VT 014 NP 015 CR 016 SO 017 SI 020 DLE 021 DC1 022 DC2 023 DC3 024 DC4 025 NAK 026 SYN 027 ETB 030 CAN 031 EM 032 SUB 033 ESC 034 FS 035 GS 036 RS 037 US 040 SP 041 ! 042 " 043 # 044 $ 045 % 046 & 047 ' 050 ( 051 ) 052 * 053 + 054 , 055 - 056 . 057 / 060 0 061 1 062 2 063 3 064 4 065 5 066 6 067 7 070 8 071 9 072 : 073 ; 074 < 075 = 076 > 077 ? 100 @ 101 A 102 B 103 C 104 D 105 E 106 F 107 G 110 H 111 I 112 J 113 K 114 L 115 M 116 N 117 O 120 P 121 Q 122 R 123 S 124 T 125 U 126 V 127 W 130 X 131 Y 132 Z 133 [ 134 135 ] 136 ^ 137 _ 140 ` 141 a 142 b 143 c 144 d 145 e 146 f 147 g 150 h 151 i 152 j 153 k 154 l 155 m 156 n 157 o 160 p 161 q 162 r 163 s 164 t 165 u 166 v 167 w 170 x 171 y 172 z 173 { 174 | 175 } 176 ~ 177 DEL Hexadecimal - Character 00 NUL 01 SOH 02 STX 03 ETX 04 EOT 05 ENQ 06 ACK 07 BEL 08 BS 09 HT 0A NL 0B VT 0C NP 0D CR 0E SO 0F SI 10 DLE 11 DC1 12 DC2 13 DC3 14 DC4 15 NAK 16 SYN 17 ETB 18 CAN 19 EM 1A SUB 1B ESC 1C FS 1D GS 1E RS 1F US 20 SP 21 ! 22 " 23 # 24 $ 25 % 26 & 27 ' 28 ( 29 ) 2A * 2B + 2C , 2D - 2E . 2F / 30 0 31 1 32 2 33 3 34 4 35 5 36 6 37 7 38 8 39 9 3A : 3B ; 3C < 3D = 3E > 3F ? 40 @ 41 A 42 B 43 C 44 D 45 E 46 F 47 G 48 H 49 I 4A J 4B K 4C L 4D M 4E N 4F O 50 P 51 Q 52 R 53 S 54 T 55 U 56 V 57 W 58 X 59 Y 5A Z 5B [ 5C 5D ] 5E ^ 5F _ 60 ` 61 a 62 b 63 c 64 d 65 e 66 f 67 g 68 h 69 i 6A j 6B k 6C l 6D m 6E n 6F o 70 p 71 q 72 r 73 s 74 t 75 u 76 v 77 w 78 x 79 y 7A z 7B { 7C | 7D } 7E ~ 7F DEL Decimal - Character 0 NUL 1 SOH 2 STX 3 ETX 4 EOT 5 ENQ 6 ACK 7 BEL 8 BS 9 HT 10 NL 11 VT 12 NP 13 CR 14 SO 15 SI 16 DLE 17 DC1 18 DC2 19 DC3 20 DC4 21 NAK 22 SYN 23 ETB 24 CAN 25 EM 26 SUB 27 ESC 28 FS 29 GS 30 RS 31 US 32 SP 33 ! 34 " 35 # 36 $ 37 % 38 & 39 ' 40 ( 41 ) 42 * 43 + 44 , 45 - 46 . 47 / 48 0 49 1 50 2 51 3 52 4 53 5 54 6 55 7 56 8 57 9 58 : 59 ; 60 < 61 = 62 > 63 ? 64 @ 65 A 66 B 67 C 68 D 69 E 70 F 71 G 72 H 73 I 74 J 75 K 76 L 77 M 78 N 79 O 80 P 81 Q 82 R 83 S 84 T 85 U 86 V 87 W 88 X 89 Y 90 Z 91 [ 92 93 ] 94 ^ 95 _ 96 ` 97 a 98 b 99 c 100 d 101 e 102 f 103 g 104 h 105 i 106 j 107 k 108 l 109 m 110 n 111 o 112 p 113 q 114 r 115 s 116 t 117 u 118 v 119 w 120 x 121 y 122 z 123 { 124 | 125 } 126 ~ 127 DEL FILES
/usr/pub/ascii On-line chart of octal and hexadecimal values for the ASCII character set. SunOS 5.10 19 Apr 2002 ascii(5)
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