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UNIX for Dummies Questions & Answers
ksh with Oracle commands
Post 302915376 by jim mcnamara on Tuesday 2nd of September 2014 03:51:28 PM
09-02-2014
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LEARN ABOUT DEBIAN
coils-wrap
COILS-WRAP(1) User Commands COILS-WRAP(1) NAME
coils-wrap - runs ncoils three times to give you a three-window output SYNOPSIS
coils-wrap [OPTION] DESCRIPTION
coils-wrap runs ncoils three times to give you a three-window output. ncoils is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that the sequence will adopt a coiled-coil conformation. OPTIONS
-i input file in FASTA format -o output file -r raw output file, default: `<output file>_raw' -m matrix type; set matrix (MTK or MTIDK) -w weight a&d = b,c,e,f&g (boolean) EXAMPLES
"coils-wrap -m MTIDK -i /usr/share/doc/ncoils/1srya.fa -o /tmp/coils.out -r /tmp/coils_raw.txt && less /tmp/coils.out /tmp/coils_raw.txt" "ncoils -win 14 < /usr/share/doc/ncoils/1srya.fa" FILES
/usr/share/coiledcoils/*.mat matrix data files AUTHOR
R.B. Russell, A.N. Lupas, 1999 COPYRIGHT AND LICENSE
GPL Based on Lupas, Van Dyck & Stock (1991) Science 252,1162-1164 SEE ALSO
ncoils(1), "usr/share/doc/coils/README", http://www.russelllab.org/cgi-bin/coils/coils-svr.pl <http://www.russelllab.org/cgi- bin/coils/coils-svr.pl> A Lupas: Prediction and Analysis of Coiled-Coil Structures. Methods in Enzymology, 266, 513-525, 1996 A. Lupas, M. Van Dyke, and J. Stock: Predicting coiled coils from protein sequences. Science, 252, 1162-1164, 1991 2002 2011-10-29 COILS-WRAP(1)