---------- Post updated 07-08-14 at 02:34 AM ---------- Previous update was 06-08-14 at 11:34 AM ----------
Sorry for my English.
I can not get the script work properly.
How I can make it work with variables for start file, end file and destination?
I've tried this code and it does not work.
Hi,
I have a sun sparc system. I don't have a sun keyboard, hence i connected a pc keyboard.
I would like to know the "STOP A" equivalent command to be used on pc keyboard.
Regards,
Raja (4 Replies)
Hi all,
We have CVS server running for few years with absolutely no problems.
Because of conditions not depending on me, I'm forced to move some part of our repository to another server (SVN). I need to move ONLY one branch from CVS server to SVN server. The branch must be moved with all... (7 Replies)
Hi all,
I have a requirement where the variable name starts with $, like
$Amd=/home/student/test/
How to work wit it? can some one help me, am in gr8 confusion:confused: (5 Replies)
Hi there,
I am lil confused with the following issue.
I have a File, which has the following header: IMSHRATE_043008_101016
a sample detailed record is :9820101 A982005000CAVG030108000000000000010169000MAR 2008
9820102 MAR 2008 D030108
... (1 Reply)
Hi,
I have 80 large files, from which I want to get a specific value to run a Bash script. Firstly, I want to get the part of a file which contains this:
Name =A
xxxxxx
yyyyyy
zzzzzz
aaaaaa
bbbbbb
Value = 57
This is necessary because in a file there are written more lines which... (6 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
If I run rm -rf * command under one parent directory.
/data > rm -rf *
Is there anyway to know which files will be deleted first ?
Start using code tags please, ty. (2 Replies)
I am on linux red hat, want to use the logic within bash shell script file.
I have the following type, named files in folder /staging, want to move with new filename just the firstpart upto underscore, example 20180904105056.dat, how can i get upto first part of filename and validate to chk if... (2 Replies)
Hi All,
We've a VDI infrastructure in AWS (AWS workspaces) and we're planning to automate the process of provisioning workspaces. Instead of going to GUI console, and launching workspaces by selecting individual users is little time consuming. Thus, I want to create them in bunches from AWS CLI... (6 Replies)
Discussion started by: arun_adm
6 Replies
LEARN ABOUT DEBIAN
bp_sreformat
BP_SREFORMAT(1p) User Contributed Perl Documentation BP_SREFORMAT(1p)NAME
bpsreformat - convert sequence formats
DESCRIPTION
This script uses the SeqIO system that allows conversion of sequence formats either sequence data or multiple sequence alignment data. The
name comes from the fact that Sean Eddy's program sreformat (part of the HMMER pkg) already does this. Sean's program tries to guess the
input formats while in our code we currently require your to specify what the input and output formats are and if the data is from a
multiple sequence alignment or from straight sequence files.
Usage:
bpsreformat -if INFORMAT -of OUTFORMAT -i FILENAME -o output.FORMAT
-h/--help Print this help
-if/--informat Specify the input format
-of/--outformat Specify the output format
-i/--input Specify the input file name
(to pass in data on STDIN use minus sign as filename)
-o/--output Specify the output file name
(to pass data out on STDOUT use minus sign as filename)
--msa Specify this is multiple sequence alignment data
--special Will pass on special parameters to the AlignIO/SeqIO
object -- most of these are for Bio::AlignIO objects
Comma separated list of the following
nointerleaved -- for phylip,non-interleaved format
idlinebreak -- for phylip, makes it molphy format
percentages -- for clustalw, show % id per line
perl v5.14.2 2012-03-02 BP_SREFORMAT(1p)