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Top Forums Shell Programming and Scripting How to get min and max values using awk? Post 302911754 by redse171 on Saturday 2nd of August 2014 07:35:12 PM
Old 08-02-2014
Hi RudiC,

Thanks a lot for your quick response.
I am not really clear about your question above but, I am extracting info for gene features and that's how to find out the region for the coding sequence.

i tried your code but it did not give accurate results on my real data. I tried to change and play around with your code but still the result is not correct. below is the sample result that i got:-


Code:
SP12.5	CD	2249762	2249821	-	ID2_N006	 ID2_N006T1
SP12.5	CD	3004994	3005025	+	D2_N0114	ID2_N01140T0
SP12.5	CD	2249762	2249821	-	ID2_N006	 ID2_N006T0
SP12.5	CD	2241471	2241681	+	ID2_N003	 ID2_N003T0

If u don't mind, can you explain about your codes? The above data is just a sample. for $1, i have many different values, not only SP12.3. So, i changed "print "SP12.3"" to print "$1". But the output is still wrong. Thanks

Last edited by redse171; 08-03-2014 at 06:23 PM..
 

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MIN(3)									 1								    MIN(3)

min - Find lowest value

SYNOPSIS
mixed min (array $values) DESCRIPTION
mixed min (mixed $value1, mixed $value2, [mixed $...]) If the first and only parameter is an array, min(3) returns the lowest value in that array. If at least two parameters are provided, min(3) returns the smallest of these values. Note Values of different types will be compared using the standard comparison rules. For instance, a non-numeric string will be com- pared to an integer as though it were 0, but multiple string values will be compared alphanumerically. The actual value returned will be of the original type with no conversion applied. PARAMETERS
o $values - An array containing the values. o $value1 - Any comparable value. o $value2 - Any comparable value. o $... - Any comparable value. RETURN VALUES
min(3) returns the parameter value considered "lowest" according to standard comparisons. If multiple values of different types evaluate as equal (e.g. 0 and 'abc') the first provided to the function will be returned. EXAMPLES
Example #1 Example uses of min(3) <?php echo min(2, 3, 1, 6, 7); // 1 echo min(array(2, 4, 5)); // 2 // The string 'hello' when compared to an int is treated as 0 // Since the two values are equal, the order they are provided determines the result echo min(0, 'hello'); // 0 echo min('hello', 0); // hello // Here we are comparing -1 < 0, so -1 is the lowest value echo min('hello', -1); // -1 // With multiple arrays of different lengths, min returns the shortest $val = min(array(2, 2, 2), array(1, 1, 1, 1)); // array(2, 2, 2) // Multiple arrays of the same length are compared from left to right // so in our example: 2 == 2, but 4 < 5 $val = min(array(2, 4, 8), array(2, 5, 1)); // array(2, 4, 8) // If both an array and non-array are given, the array is never returned // as comparisons treat arrays as greater than any other value $val = min('string', array(2, 5, 7), 42); // string // If one argument is NULL or a boolean, it will be compared against // other values using the rule FALSE < TRUE regardless of the other types involved // In the below examples, both -10 and 10 are treated as TRUE in the comparison $val = min(-10, FALSE, 10); // FALSE $val = min(-10, NULL, 10); // NULL // 0, on the other hand, is treated as FALSE, so is "lower than" TRUE $val = min(0, TRUE); // 0 ?> SEE ALSO
max(3), count(3). PHP Documentation Group MIN(3)
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