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Full Discussion: Find the missing sequence
Top Forums Shell Programming and Scripting Find the missing sequence Post 302911656 by bharat1211 on Saturday 2nd of August 2014 08:26:22 AM
Old 08-02-2014
Other way to accomplish the task...

Input file:

Code:
cat list.txt
df00231587.dat
df01231587.dat
df03231587.dat
df05231587.dat
df0631587.dat 
df0731587.dat 
df08231587.dat 
df09231587.dat 
df11231587.dat 
df10231587.dat 
df19231587.dat 
df18231587.dat 
df17231587.dat 
df16231587.dat

if u run the below script..

Code:
awk -F"." '{
b=substr($1,5);
a[NR]=substr($1,3,2);
n=NR;
}
END {
for(l=0;l<=23;l++)
{
s=sprintf("%02d",l);
for(i=1;i<=n;i++)
{
if(s != a[i])
{
c=c+1;
}
}
if(c==n)
{
print s b;
}
c=0;
}
}' list.txt

the output is..

Code:
02231587
04231587
12231587
13231587
14231587
15231587
20231587
21231587
22231587
23231587

---------- Post updated at 12:26 PM ---------- Previous update was at 12:25 PM ----------

the above are missing files from list.txt
 

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LEARN ABOUT DEBIAN

unknown

UNKNOWN(1)						      General Commands Manual							UNKNOWN(1)

NAME

       unknown - identify possible genotypes for unknowns

SYNOPSIS

       A program to rapidly identify which genotypes are possible for individuals typed as unknowns in the input pedigree.

       unknown [ -cl ]

DESCRIPTION

       unknown infers possible genotypes and mating combinations for parents with unknown genotypes for ilink(1), mlink(1) and linkmap(1).

OPTIONS

       -c     Use conditional allele frequencies.

       -l     Choose a good set of loop breakers automatically.

RETURN VALUE

       0     Successful completion

ERRORS

       10    File not found
       255   Failure

EXAMPLES

       Normally, unknown(1) is run immediately prior to its sister programs, ilink(1), mlink(1) and linkmap(1), like this:

       unknown
       mlink

FILES

       unknown(1) reads the two files pedfile.dat and datafile.dat as its own input and produces various temporary files that are used as input to
       the next program. These temporary files are ipedfile.dat, upedfile.dat, speedfile.dat and newspeedfile.dat.

NOTES

       unknown(1) is part of the FASTLINK package, which is a re-implementation of the LINKAGE suite  of  computer  tools  that  help  investigate
       genetic linkage as first proposed G.M. Lathrop, J.M. Lalouel, C. Julier, and J. Ott.

AUTHORS

       Dylan Cooper, Alejandro Schaffer, and Tony Schurtz based on work originally by Jurg Ott, Ph.D, et. al.

       This manual page was written by Elizabeth Barham <lizzy@soggytrousers.net> for the Debian GNU/Linux system (but may be used by others).

WORD-WIDE-WEB
       http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html

SEE ALSO

       ilink(1), linkmap(1), lodscore(1), mlink(1).

								  April 15, 2003							UNKNOWN(1)
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