Hi,
I am a beginner in unix shell scripting.
I wanted simple information like
1- How to know what are the number of command line options given for the script file?
2- How to check if a variable value is interger or string?
3- How to use awk to replace value of a variable
For example I... (5 Replies)
Hi all
I hope to find what i'm looking for in this forum
as said in the topic i want to track user's actions on the system. i mean also the action of moving or removing files. I have an HP 9000 with HP UX 11i. the users log on the HP from a terminal window under WIndows XP
Thx (3 Replies)
I would like to change the lines:
originalline1
originalline2
to:
originalline1new
originalline1newline
originalline2new
originalline2newline
To do this, id like to combine the commands:
sed 's/^/&new/g' file > newfile1
and
sed '/^/ a\\
newline\\
\\ (2 Replies)
Before I ask my actual question, is it going to be a problem that I want to run this process on a 15 Gig file that is ~140 million rows?
What I'm trying to do:
I have a file that looks like
Color,Type,Count,Day
Yellow,Full
5
Tuesday
Green,Half
6
Wednesday
Purple,Half
8
Tuesday
...... (3 Replies)
Hi all,
I have mistkanely gzipped twice an entire folder and sub folders, and also renamed the files during that process.
I am trying to undo this, and I need help to create the batch to work on it.
All folders are under my images directory, I have a output.txt file that holds all the... (1 Reply)
Hi experts,
I have a requirement, In which I need to display the first and last line of a zip file where the line starts with "L". I've writen the code like below using sed and awk.
gunzip -c 20110203.1104.gz | awk '$1 ~ "^L" {print substr($0,178,15)}' | sed -n '1p;$p'
Is it possible to do it... (8 Replies)
Hi,
I'm using AIX(ksh shell).
> cat temp.txt
"a","b",0
"c",bc",0
"a1","b1",0
"cc","cb",1
"cc","b2",1
"bb","bc",2
I want the output as:
"a","b","c","bc","a1","b1"
"cc","cb","cc","b2"
"bb","bc"
I want to combine multiple lines into single line where third column is same.
Is... (1 Reply)
I need to run a cronjob that will monitor a directory for files with a certain extension, when one appears I then need to run the below scripts How do I go about combining the following sed statements into one script? and also retain the original filename.?
sed 's/71502FSC1206/\n&/g' # add a... (2 Replies)
Here is the whole script, very simple, but I am just learning
ROK_NO=$1
RPT=/tmp/test
sed -E '/^SELECT/ s/(.{23}).{8}/\1'"$ROK_NO"' /' $RPT
echo $RPT
When I run this I get
$ bash rok.sh 2388085
: No such file or directory
/tmp/test
When I type the command in console, it works... (3 Replies)
Discussion started by: isey78
3 Replies
LEARN ABOUT DEBIAN
go-filter-subset
GO-FILTER-SUBSET(1p) User Contributed Perl Documentation GO-FILTER-SUBSET(1p)NAME
go-filter-subset.pl - extracts a subgraph from an ontology file
SYNOPSIS
go-filter-subset.pl -id GO:0003767 go.obo
go-filter-subset.pl -id GO:0003767 -to png go.obo | xv -
go-filter-subset.pl -filter_code 'sub{shift->name =~ /transcr/}' go.obo
DESCRIPTION
Exports a subset of an ontology from a file. The subset can be based on a specified set of IDs, a preset "subset" filter in the ontology
file (eg a GO "slim" or subset), or a user-defined filter.
The subset can be exported in any format, including a graphical image
ARGUMENTS -id ID
ID to use as leaf node in subgraph. All ancestors of this ID are included in the exported graph (unless -partial is set)
Multiple IDs can be passed
-id ID1 -id ID2 -id ID3 ....etc
-subset SUBSET_ID
Extracts a named subset from the ontology file. (only works with obo format files). For example, a specific GO slim
ONLY terms belonging to the subset are exported - the -partial option is automatically set
-namespace NAMESPACE
only terms in this namespace
-filter_code SUBROUTINE
advanced option
A subroutine with which the GO::Model::Term object is tested for inclusion in the subgraph (all ancestors are automatically included)
You should have an understanding of the go-perl object model before using this option
Example:
go-filter-subset -filter_code 'sub {shift->namespace eq 'molecular_function'}' go.obo
(the same things can be achieved with the -namespace option)
-partial
If this is set, then only terms that match the user query are included. Parentage is set to the next recursive parent node in the
filter
For example, with the -subset option: if X and Y belong to the subset, and Z does not, and X is_a Z is_a Y, then the exported graph
withh have X is_a Y
-use_cache
If this switch is specified, then caching mode is turned on.
With caching mode, the first time you parse a file, then an additional file will be exported in a special format that is fast to parse.
This file will have the same filename as the original file, except it will have the ".cache" suffix.
The next time you parse the file, this program will automatically check for the existence of the ".cache" file. If it exists, and is
more recent than the file you specified, this is parsed instead. If it does not exist, it is rebuilt.
DOCUMENTATION
<http://www.godatabase.org/dev>
perl v5.14.2 2010-05-12 GO-FILTER-SUBSET(1p)