First line in file "file" is PA2_2_f1010 so it is echoing correctly.
What VMD wants is the value of a variable $line which contains the first line of the file "file", namely PA2_2_f1010..
but I tried running with $line and just line, no difference.
Code:
[user]$ ./batch_vmdgenpqr.sh
line: PA2_2_f1010
Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
Info) http://www.ks.uiuc.edu/Research/vmd/
Info) Email questions and bug reports to vmd@ks.uiuc.edu
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 32 CPUs detected.
Info) Free system memory: 111420MB (86%)
Info) Creating CUDA device pool and initializing hardware...
CUDA error: invalid device symbol, CUDAClearDevice.cu line 62
Info) Detected 1 available CUDA accelerator:
Info) [0] Quadro K5000 8 SM_3.0 @ 0.71 GHz, 4.0GB RAM, KTO, OIO, ZCP
Info) Dynamically loaded 2 plugins in directory:
Info) /opt/vmd-1.9.1/plugins/LINUXAMD64/molfile
can't read "line": no such variable
Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
Info) Exiting normally.
invalid command name "PA2_2_f1043"
Hi All,
I have the same problem as the one posted in
https://www.unix.com/shell-programming-scripting/96097-how-read-value-specific-line-column-csh-variable.html
but I'm using bash.
Can anyone tell me how I have to modify the code to make it bash compatible?
eval `awk 'NR==3{print "set... (5 Replies)
I am using the while-loop to read a file.
The file has lines with null-terminated strings (words, actually.)
What I have by that reading - just a first word up to '\0'!
I need to have whole string up to 'new line' - (LF, 10#10, 16#A)
What I am doing wrong?
#make file 'grb' with... (6 Replies)
...when the lines use both a colon and commas to separate the parts you want read as information.
The first version of this script used cut and other non-Bash-builtins, frequently, which made it nice and zippy with little more than average processor load in GNOME Terminal but, predictably, slow... (2 Replies)
Hello everybody,
I'm still slowly treading my way into bash scripting (without any prior programming experience) and hence my code is mostly what some might call "creative" if they meant well :D
I have created a script that serves its purpose but it does so very slowly, since it needs to work... (4 Replies)
Hi
I am new to writing script and want to use a Bash Piped while-read and read from user input.
if something happens on server.log then do while loop or if something happend on user input then do while loop.
Pseudocode something like:
tail -n 3 -f server.log | while read serverline || read... (8 Replies)
Hi All,
Am trying to write wrapper shell/bash script on a utility tool for which i need to pass 2 files as arugment to execute utility tool.
Wraper script am trying is to do with above metion 2 files.
utility tool accepts :
a. userinfo file : which contains username
b. item file : which... (2 Replies)
Heyas
I'm trying to read/display a file its content and put borders around it (tui-cat / tui-cat -t(ypwriter).
The typewriter-part is a 'bonus' but still has its own flaws, but thats for later.
So in some way, i'm trying to rewrite cat using bash and other commands.
But sadly it fails on... (2 Replies)
Heyas
So while i'm trying to increase security/usability of my TUI commands, i'm currently at tui-conf-get.
There was also a bug, i wanted to fix, but sadly that bugfix is more insecure - but twice as fast as my current buggy method.
I've added a getopts toggle, '-s' to toggle beSecure,... (8 Replies)
Hello,
I'm works on Ubuntu server
My goal : I would like to read file line per line, but i want to started at the end of file.
Currently, I use instructions :
while read line;
do
COMMAND
done < /var/log/apache2/access.log
But, the first line, i don't want this. The file is long... (5 Replies)
I'm new to Linux (Ubuntu 16.04), and very new to BASH scripting. I have a Numato 8-channel USB GPIO device, which is a DAQ that appears in the system as a serial port. In Linux it appears as ttyACM0. I can easily manipulate a GPO with, for example:
echo "gpio set 7" > /dev/ttyACM0
...followed... (12 Replies)
Discussion started by: Chalk-X
12 Replies
LEARN ABOUT DEBIAN
app::info::handler::prompt
App::Info::Handler::Prompt(3pm) User Contributed Perl Documentation App::Info::Handler::Prompt(3pm)NAME
App::Info::Handler::Prompt - Prompting App::Info event handler
SYNOPSIS
use App::Info::Category::FooApp;
use App::Info::Handler::Print;
my $prompter = App::Info::Handler::Print->new;
my $app = App::Info::Category::FooApp->new( on_unknown => $prompter );
# Or...
my $app = App::Info::Category::FooApp->new( on_confirm => 'prompt' );
DESCRIPTION
App::Info::Handler::Prompt objects handle App::Info events by printing their messages to "STDOUT" and then accepting a new value from
"STDIN". The new value is validated by any callback supplied by the App::Info concrete subclass that triggered the event. If the value is
valid, App::Info::Handler::Prompt assigns the new value to the event request. If it isn't it prints the error message associated with the
event request, and then prompts for the data again.
Although designed with unknown and confirm events in mind, App::Info::Handler::Prompt handles info and error events as well. It will simply
print info event messages to "STDOUT" and print error event messages to "STDERR". For more interesting info and error event handling, see
App::Info::Handler::Print and App::Info::Handler::Carp.
Upon loading, App::Info::Handler::Print registers itself with App::Info::Handler, setting up a single string, "prompt", that can be passed
to an App::Info concrete subclass constructor. This string is a shortcut that tells App::Info how to create an App::Info::Handler::Print
object for handling events.
INTERFACE
Constructor
new
my $prompter = App::Info::Handler::Prompt->new;
Constructs a new App::Info::Handler::Prompt object and returns it. No special arguments are required.
BUGS
Please send bug reports to <bug-app-info@rt.cpan.org> or file them at <http://rt.cpan.org/NoAuth/Bugs.html?Dist=App-Info>.
AUTHOR
David Wheeler <david@justatheory.com>
SEE ALSO
App::Info documents the event handling interface.
App::Info::Handler::Carp handles events by passing their messages Carp module functions.
App::Info::Handler::Print handles events by printing their messages to a file handle.
App::Info::Handler describes how to implement custom App::Info event handlers.
COPYRIGHT AND LICENSE
Copyright (c) 2002-2008, David Wheeler. Some Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.10.1 2011-03-15 App::Info::Handler::Prompt(3pm)