Bash while read line Post: 302910491

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Top Forums Shell Programming and Scripting Bash while read line Post 302910491 by chrisjorg on Thursday 24th of July 2014 08:09:05 PM

07-24-2014

Registered User

First line in file "file" is PA2_2_f1010 so it is echoing correctly.

What VMD wants is the value of a variable $line which contains the first line of the file "file", namely PA2_2_f1010..

but I tried running with $line and just line, no difference.

Code:

[user]$ ./batch_vmdgenpqr.sh 
line: PA2_2_f1010
Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
Info) http://www.ks.uiuc.edu/Research/vmd/                         
Info) Email questions and bug reports to vmd@ks.uiuc.edu           
Info) Please include this reference in published work using VMD:   
Info)    Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual   
Info)    Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 32 CPUs detected.
Info) Free system memory: 111420MB (86%)
Info) Creating CUDA device pool and initializing hardware...
CUDA error: invalid device symbol, CUDAClearDevice.cu line 62
Info) Detected 1 available CUDA accelerator:
Info) [0] Quadro K5000        8 SM_3.0 @ 0.71 GHz, 4.0GB RAM, KTO, OIO, ZCP
Info) Dynamically loaded 2 plugins in directory:
Info) /opt/vmd-1.9.1/plugins/LINUXAMD64/molfile
can't read "line": no such variable
Info) VMD for LINUXAMD64, version 1.9.1 (February 1, 2012)
Info) Exiting normally.
invalid command name "PA2_2_f1043"

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snmp::info::layer3::netscreen

Info::Layer3::Netscreen(3pm)				User Contributed Perl Documentation			      Info::Layer3::Netscreen(3pm)

NAME

       SNMP::Info::Layer3::Netscreen - SNMP Interface to Juniper Netscreen Devices

AUTHOR

       Kent Hamilton

SYNOPSIS

	   #Let SNMP::Info determine the correct subclass for you.

	   my $netscreen = new SNMP::Info(
				 AutoSpecify => 1,
				 Debug	     => 1,
				 DestHost    => 'myswitch',
				 Community   => 'public',
				 Version     => 2
			       )

	   or die "Can't connect to DestHost.
";

	   my $class = $netscreen->class();
	   print "SNMP::Info determined this device to fall under subclass : $class
";

DESCRIPTION

       Provides abstraction to the configuration information obtainable from a Netscreen device through SNMP. See inherited classes' documentation
       for inherited methods.

       my $netscreen = new SNMP::Info::Layer3::Netscreen(...);

   Inherited Classes
       SNMP::Info::Layer3

   Required MIBs
       NETSCREEN-SMI
       NETSCREEN-PRODUCTS-MIB
       NETSCREEN-INTERFACE-MIB
       NETSCREEN-SET-GEN-MIB
       Inherited Classes
	   See "Required MIBs" in SNMP::Info::Layer3 and its inherited classes.

GLOBALS

       These are methods that return scalar value from SNMP

       $netscreen->vendor()
	   Returns 'netscreen'

       $netscreen->os()
	   Returns 'screenos'

       $netscreen->os_ver()
	   Extracts the OS version from the description string.

       $netscreen->serial()
	   Returns serial number..

   Overrides
       $netscreen->layers()
	   Returns 01001100.  Device doesn't report layers properly, modified to reflect Layer3 functionality.

   Globals imported from SNMP::Info::Layer3
       See "GLOBALS" in SNMP::Info::Layer3 for details.

TABLE METHODS

       These are methods that return tables of information in the form of a reference to a hash.

   Table Methods imported from SNMP::Info::Layer3
       See "TABLE METHODS" in SNMP::Info::Layer3 for details.

perl v5.12.4							    2011-09-28					      Info::Layer3::Netscreen(3pm)