You may have to deal with missing data individually, here I check the 58th character to see if it is a space and replace all spaces from here with a comma. You will need to repeat this technique for any column that may contain blank values.
Hi all,
I have a file with single white space delimited values, I want to convert them to a tab delimited file.
I tried sed, tr ... but nothing is working.
Thanks,
Rajeevan D (16 Replies)
Hi,
Can any one please help me in converting a tab delimited file in .csv file.
Records in my file are similar to mentioned below:
DET 001 0201 AC032508970 01478E1X8
DET 002 0202 AC032508971 01478E1X8
Could any one please suggest me what approach would be more suitable for this or if... (5 Replies)
I have a text file that made using text editor in Ubuntu. However the text file is not being recognized as space or tab delimited, the formatting seems to be messed up. How can I convert the text file into tab delimited format? (3 Replies)
Hi All,
I have space delimited file similar to the one as shown below.. I need to convert it as a pipe delimited, the values inside the pipe delimited file should be as highlighted...
AA ATIU2345098809 009697 005374
BB ATIU2345097809 005445 006518
CC ATIU9685098809 003215 003571
DD... (7 Replies)
Hi,
I have a space delimited text file but I only want to change the first space to a tab and keep the rest of the spaces intact. How do I go about doing that? Thanks! (3 Replies)
Hi How to make tab delimited file to space delimited?
in put file:
ABC kgy
jkh ghj
ash kjl
o/p file:
ABC kgy
jkh ghj
ash kjl
Use code tags, thanks. (1 Reply)
Hi, I have a rquirement in unix as below .
I have a text file with me seperated by | symbol and i need to generate a excel file through unix commands/script so that each value will go to each column.
ex:
Input Text file:
1|A|apple
2|B|bottle
excel file to be generated as output as... (9 Replies)
Input file:
xyz,pqrs.lmno,NA,NA,NA,NA,NA,NA,NA
abcd,pqrs.xyz,NA,NA,NA,NA,NA,NA,NA
Expected Output:
xyz pqrs.lmno NA NA NA NA NA NA NA
abcd pqrs.xyz NA NA NA NA NA NA NA
Command Tried so far:
awk -F"," 'BEGIN{OFS=" ";} {print}' $File_Path/File_Name.csv
Issue:... (5 Replies)
Discussion started by: TechGyaann
5 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS -C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)