You may have to deal with missing data individually, here I check the 58th character to see if it is a space and replace all spaces from here with a comma. You will need to repeat this technique for any column that may contain blank values.
Code:
sed -Ee 's/^(.{57}) */\1,/' -e 's/\t/,/g' -e 's/ */,/g' infile
Hi all,
I have a file with single white space delimited values, I want to convert them to a tab delimited file.
I tried sed, tr ... but nothing is working.
Thanks,
Rajeevan D (16 Replies)
Hi,
Can any one please help me in converting a tab delimited file in .csv file.
Records in my file are similar to mentioned below:
DET 001 0201 AC032508970 01478E1X8
DET 002 0202 AC032508971 01478E1X8
Could any one please suggest me what approach would be more suitable for this or if... (5 Replies)
I have a text file that made using text editor in Ubuntu. However the text file is not being recognized as space or tab delimited, the formatting seems to be messed up. How can I convert the text file into tab delimited format? (3 Replies)
Hi All,
I have space delimited file similar to the one as shown below.. I need to convert it as a pipe delimited, the values inside the pipe delimited file should be as highlighted...
AA ATIU2345098809 009697 005374
BB ATIU2345097809 005445 006518
CC ATIU9685098809 003215 003571
DD... (7 Replies)
Hi,
I have a space delimited text file but I only want to change the first space to a tab and keep the rest of the spaces intact. How do I go about doing that? Thanks! (3 Replies)
Hi How to make tab delimited file to space delimited?
in put file:
ABC kgy
jkh ghj
ash kjl
o/p file:
ABC kgy
jkh ghj
ash kjl
Use code tags, thanks. (1 Reply)
Hi, I have a rquirement in unix as below .
I have a text file with me seperated by | symbol and i need to generate a excel file through unix commands/script so that each value will go to each column.
ex:
Input Text file:
1|A|apple
2|B|bottle
excel file to be generated as output as... (9 Replies)
Input file:
xyz,pqrs.lmno,NA,NA,NA,NA,NA,NA,NA
abcd,pqrs.xyz,NA,NA,NA,NA,NA,NA,NA
Expected Output:
xyz pqrs.lmno NA NA NA NA NA NA NA
abcd pqrs.xyz NA NA NA NA NA NA NA
Command Tried so far:
awk -F"," 'BEGIN{OFS=" ";} {print}' $File_Path/File_Name.csv
Issue:... (5 Replies)
Discussion started by: TechGyaann
5 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)