I am creating a script which will connect to remote server with ssh and perfom below.
- Search in a directory
- Search for a pattern
- Check the size if greater than the size_limit rename the file.
Below is the code i have written.
But it is not able to rename.
Below is the error encountered
Kindly help me in identifying the issue.
Last edited by Scrutinizer; 07-02-2014 at 07:18 AM..
Reason: code tags
Hi All,
I want to rename set of files in the remote server which iam unable to do . i can rename only one file
at a time . for example
ftp $REMOTESERVER
{
rename $NAME1 $NAME2
} is working
whereas
ftp $REMOTESERVER
{
rename $NAME1*.dat $NAME2*.data
} is not working ...... (4 Replies)
Hi,
I have around 100 xml file in a directory. I need to rename the files from .xml to .xml1. So i tried using the following command:
mv *.xml *.xml1
but i am getting the following error
mv: when moving multiple files, last argument must be a directory
Try `mv --help' for more... (8 Replies)
Hi All,
I want to search for .log files from folders and sub folders in remote server and FTP them to one particular folder in the local machine. I dont want to copy the entire directory tree structure, just have to take all the .log files from all the folders by doing a recursive search from the... (3 Replies)
I have a number of files in directories labeled like this:
/Data/tr_gray/tr_DTI/dti_FA.nii.gz
(the brackets here represent a range of number that the files are labeled with)
I need to rename each dti_FA.nii.gz file according to the name of the folder it resides in. For example, the file ... (3 Replies)
Dear friends,
I have created a script to rename all files in a directory by appending the file name with username (who created the file), the date it was created. For example, "apple.doc" should be renamed to "johnFeb23apple.doc" where "john" is the owner and "Feb23" is file created date. It... (4 Replies)
I need to pull down a good bit of files for another support team for an upgrade project. I have a server.list with all of the server names.
I need to do two parts:
FIRST:
I have this example, but it does not list the server name in front of each line.
#! /bin/bash
for server in $(<... (10 Replies)
I have a directory e2e_ms_xfer/cent01
this contains the multiple files some of which will be named below with unique date time stamps
e2e_ms_edd_nom_CCYYMMDD_HHMM.csv
What I want to do is in a loop
1) Get the oldest file
2) Rename
3) Move it up one level from e2e_ms_xfer/cent01 to... (1 Reply)
I'm using cygwin32 on Windows.
DN is an environment variable pointed at my download directory.
This command works to move the single most recent file in my download directory to my current directory:
mv "`perl -e '$p = $ARGV; opendir $h, $p or die "cannot opendir $p: $!"; @f = sort { -M $a... (2 Replies)
I want to rename (move) multiple files on remote server. I tried the following command to move all TXT files from my_dir directory to /new_dir. But it does not work. Any help?
#!/bin/ksh
sftp -dev3 << ABC
cd my_dir
$(for i in TXT; do echo "ls *.$i" ; rename $x /new_dir/$x;... (1 Reply)
Discussion started by: Soham
1 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)