Hi
I would like to accept in a string from user like
username/pwd@dbname
suppose the user does not input @ then i should throw an error that @ symbol missing . How to achieve this
Thanks in advance
Suresh (6 Replies)
Hi,
I am trying to write a shell script designed to take input line by line by line from a file with a word on each line for editing with sed. Example file:
1.ejverything
2.bllown
3.maikling
4.manegement
5.existjing
6.systems
My design currently takes input from the user, and... (2 Replies)
Hi,
I wanted to add a newline character after every 100 characters in a file using a awk or shell without reading each line of the file.
I want to run a command on the complete file.
This does based on a string but i want to add a new line after every 100 characters ir-respective of the... (3 Replies)
Greetings,
Using vi, how can I change the following text:
-I/myviews/nexus_7400rel/vobs/nexus/platforms/97400/include -I/myviews/nexus_7400rel/vobs/nexus/modules/i2c/7400/include -I/myviews/nexus_7400rel/vobs/nexus/modules/surface/7400/include
Into this:... (4 Replies)
Hi Guys,
Req your help in searching and replacing the word that comes after equals(=) symbol
I would like to replace the sting in bold with a string in variable.
d=ABCDF8C44C22
# grep -i NIM_MASTERID ${_NIMINFO}
export NIM_MASTERID=00CDF8C44C00
I'm looking to replace any word that... (4 Replies)
Hello Unix Users,
I am very new to Unix so I am not sure how do I do the following.
I need a script such that when I type the following in the command prompt
> . scriptName.sh wordToBeReplaced DirectoryLocation
will find the word someword located in a somefile.xml in DirectoryLocation... (8 Replies)
This is for AIX 6.1, I've a flat file and the format is like this
DECLARE
some statements;
BEGIN
some statements;
END;
I've to search BEGIN and replace it with the following 4 lines
BEGIN
For x in 1..1
LOOP
BEGIN
Similarly I've to search END and replace it with the... (7 Replies)
Hi All
i need to replace the url1 inside <remote> tag in below xml in first instance and in the second instance with url2.
any help appreciated
<locations>
<hudson.scm.SubversionSCM_-ModuleLocation>
<remote>https://svn2015.com/svn/repos/internalshard</remote>
... (4 Replies)
Discussion started by: madankumar.t@hp
4 Replies
10. Post Here to Contact Site Administrators and Moderators
In file, we have millions of records each of 1000 in length. And at specific position say 800 there is a space, we need to replace it with Character X if the ID in that row starts with 123.
So far i have used the below which is replacing space at that position to X but its not checking for... (3 Replies)
Discussion started by: Jagmeet Singh
3 Replies
LEARN ABOUT DEBIAN
abacas
ABACAS(1) User Commands ABACAS(1)NAME
abacas - Algorithm Based Automatic Contiguation of Assembled Sequences
SYNOPSIS
abacas -r ref -q qs -p prog [OPTIONS]
OR
abacas -r ref -q psf -e
ref reference sequence in a single fasta file
qs contigs in multi-fasta format
rog MUMmer program to use: 'nucmer' or 'promer'
psf pseudomolecule/ordered sequence file in fasta format
OPTIONS
-h print usage
-d use default nucmer/promer parameters
-s int minimum length of exact matching word (nucmer default = 12, promer default = 4)
-m print ordered contigs to file in multifasta format
-b print contigs in bin to file
-N print a pseudomolecule without "N"s
-i int mimimum percent identity [default 40]
-v int mimimum contig coverage [default 40]
-V int minimum contig coverage difference [default 1]
-l int minimum contig length [default 1]
-t run tblastx on contigs that are not mapped
-g string (file name) print uncovered regions (gaps) on reference to file name
-a append contigs in bin to the pseudomolecule
-o prefix output files will have this prefix
-P pick primer sets to close gaps
-f int number of flanking bases on either side of a gap for primer design (default 350)
-R int Run mummer [default 1, use -R 0 to avoid running mummer]
-e Escape contig ordering i.e. go to primer design
-c Reference sequence is circular
DESCRIPTION
ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs
based on a reference sequence.
ABACAS uses MUMmer to find alignment positions and identify syntenies of assembled contigs against the reference. The output is then pro-
cessed to generate a pseudomolecule taking overlapping contigs and gaps in to account. ABACAS generates a comparision file that can be used
to visualize ordered and oriented contigs in ACT. Synteny is represented by red bars where colour intensity decreases with lower values of
percent identity between comparable blocks. Information on contigs such as the orientation, percent identity, coverage and overlap with
other contigs can also be visualized by loading the outputted feature file on ACT.
AUTHOR
ABACAS IS Copyright (C) 2008-10 The Wellcome Trust Sanger Institute, Cambridge, UK.
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian project (and may be used by others).
1.3.1 2011-02-11 ABACAS(1)