Hi
I would like to accept in a string from user like
username/pwd@dbname
suppose the user does not input @ then i should throw an error that @ symbol missing . How to achieve this
Thanks in advance
Suresh (6 Replies)
Hi,
I am trying to write a shell script designed to take input line by line by line from a file with a word on each line for editing with sed. Example file:
1.ejverything
2.bllown
3.maikling
4.manegement
5.existjing
6.systems
My design currently takes input from the user, and... (2 Replies)
Hi,
I wanted to add a newline character after every 100 characters in a file using a awk or shell without reading each line of the file.
I want to run a command on the complete file.
This does based on a string but i want to add a new line after every 100 characters ir-respective of the... (3 Replies)
Greetings,
Using vi, how can I change the following text:
-I/myviews/nexus_7400rel/vobs/nexus/platforms/97400/include -I/myviews/nexus_7400rel/vobs/nexus/modules/i2c/7400/include -I/myviews/nexus_7400rel/vobs/nexus/modules/surface/7400/include
Into this:... (4 Replies)
Hi Guys,
Req your help in searching and replacing the word that comes after equals(=) symbol
I would like to replace the sting in bold with a string in variable.
d=ABCDF8C44C22
# grep -i NIM_MASTERID ${_NIMINFO}
export NIM_MASTERID=00CDF8C44C00
I'm looking to replace any word that... (4 Replies)
Hello Unix Users,
I am very new to Unix so I am not sure how do I do the following.
I need a script such that when I type the following in the command prompt
> . scriptName.sh wordToBeReplaced DirectoryLocation
will find the word someword located in a somefile.xml in DirectoryLocation... (8 Replies)
This is for AIX 6.1, I've a flat file and the format is like this
DECLARE
some statements;
BEGIN
some statements;
END;
I've to search BEGIN and replace it with the following 4 lines
BEGIN
For x in 1..1
LOOP
BEGIN
Similarly I've to search END and replace it with the... (7 Replies)
Hi All
i need to replace the url1 inside <remote> tag in below xml in first instance and in the second instance with url2.
any help appreciated
<locations>
<hudson.scm.SubversionSCM_-ModuleLocation>
<remote>https://svn2015.com/svn/repos/internalshard</remote>
... (4 Replies)
Discussion started by: madankumar.t@hp
4 Replies
10. Post Here to Contact Site Administrators and Moderators
In file, we have millions of records each of 1000 in length. And at specific position say 800 there is a space, we need to replace it with Character X if the ID in that row starts with 123.
So far i have used the below which is replacing space at that position to X but its not checking for... (3 Replies)
Discussion started by: Jagmeet Singh
3 Replies
LEARN ABOUT DEBIAN
bio::seqio::fasta
Bio::SeqIO::fasta(3pm) User Contributed Perl Documentation Bio::SeqIO::fasta(3pm)NAME
Bio::SeqIO::fasta - fasta sequence input/output stream
SYNOPSIS
Do not use this module directly. Use it via the Bio::SeqIO class.
DESCRIPTION
This object can transform Bio::Seq objects to and from fasta flat file databases.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS - Ewan Birney & Lincoln Stein
Email: birney@ebi.ac.uk
lstein@cshl.org
CONTRIBUTORS
Jason Stajich, jason-at-bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq object, or nothing if no more available
Args : NONE
write_seq
Title : write_seq
Usage : $stream->write_seq(@seq)
Function: Writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Array of 1 or more Bio::PrimarySeqI objects
width
Title : width
Usage : $obj->width($newval)
Function: Get/Set the line width for FASTA output
Returns : value of width
Args : newvalue (optional)
preferred_id_type
Title : preferred_id_type
Usage : $obj->preferred_id_type('accession')
Function: Get/Set the preferred type of identifier to use in the ">ID" position
for FASTA output.
Returns : string, one of values defined in @Bio::SeqIO::fasta::SEQ_ID_TYPES.
Default = $Bio::SeqIO::fasta::DEFAULT_SEQ_ID_TYPE ('display').
Args : string when setting. This must be one of values defined in
@Bio::SeqIO::fasta::SEQ_ID_TYPES. Allowable values:
accession, accession.version, display, primary
Throws : fatal exception if the supplied id type is not in @SEQ_ID_TYPES.
perl v5.14.2 2012-03-02 Bio::SeqIO::fasta(3pm)