05-29-2014
Hi akshay Hegde,
i dont have gawk.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have a very large file (10,000,000 lines), that contains a sample id and a property of that sample. I have another file that contains around 1,000,000 lines with sample ids that I want to remove from the original file (create a new file without these lines).
I know how to do this in Perl, but it... (9 Replies)
Discussion started by: Jo_puzzled
9 Replies
2. Shell Programming and Scripting
Hi,
I have a text file as follows:
11:38:11.054 run1_rdseq avg_2-5 999988.0000 1024.0000
11:50:52.053 run3_rdrand 999988.0000 1135.0 128.0417
11:53:18.050 run4_wrrand avg_2-5 999988.0000 8180.5833
11:55:42.051 run4_wrrand avg_2-5 999988.0000 213.8333
11:55:06.053... (2 Replies)
Discussion started by: annazpereira
2 Replies
3. Shell Programming and Scripting
Dear all,
I need to search multiple patterns and then I need to print their respective next lines. For an example, in the below table, I will look for 3 different patterns :
1) # ATC_Codes:
2) # Generic_Name:
3) # Drug_Target_1_Gene_Name:
#BEGIN_DRUGCARD DB00001
# AHFS_Codes:... (3 Replies)
Discussion started by: AshwaniSharma09
3 Replies
4. Shell Programming and Scripting
I have two files. The first containing a header and six columns of data.
Example file 1:
Number SNP ID dbSNP RS ID Chromosome Result_Call Physical Position
787066 SNP_A-8575395 RS6650104 1 NOCALL 564477
786872 SNP_A-8575125 RS10458597 1 AA ... (13 Replies)
Discussion started by: Selftaught
13 Replies
5. Shell Programming and Scripting
I need to print out sections (varying numbers of lines) of a file between patterns. That alone is easy enough: sed -n '/START/,/STOP/' I also need the 3 lines BEFORE the start pattern. That alone is easy enough: grep -B3 START But I can't seem to combine the two so that I get everything between the... (2 Replies)
Discussion started by: Finja
2 Replies
6. Shell Programming and Scripting
Hi,
I want to print only lines (green-italic lines) in between first and last strings in column 9.
there are different number of lines between each strings.
10 AUGUSTUS exon 4558 4669 . - . 10.g1
10 AUGUSTUS exon 8771 8889 . ... (6 Replies)
Discussion started by: jamo
6 Replies
7. Shell Programming and Scripting
Hi Gurus,
I have a requirement where I need to display all lines between 2 patterns except the line where the first pattern in it. I tried the following command using awk but it is printing all lines except the lines where the 2 patterns exist.
awk '/TRANSF_/{ P=1; next } /Busy/ {exit} P'... (9 Replies)
Discussion started by: svajhala
9 Replies
8. Shell Programming and Scripting
Hi
I need to egrep patterns in a file and limit number of matches to print for each matched pattern.
-m10 option is not working out in my sun solaris 5.10
Please guide me the options to achieve.
if i do head -10 , i wont be getting all pattern match results as output since for a... (10 Replies)
Discussion started by: ananan
10 Replies
9. Shell Programming and Scripting
In the awk below I am trying to output those lines that Match between file1 and file2, those Missing in file1, and those missing in file2. Using each $1,$2,$4,$5 value as a key to match on, that is if those 4 fields are found in both files the match, but if those 4 fields are not found then missing... (0 Replies)
Discussion started by: cmccabe
0 Replies
10. UNIX for Beginners Questions & Answers
Hi, I need to print lines which are matching with start pattern "SELECT" and END PATTERN ";" and only select the last "select" statement including the ";" .
I have attached sample input file and the desired input should be as:
INPUT FORMAT:
SELECT
ABCD,
DEFGH,
DFGHJ,
JKLMN,
AXCVB,... (5 Replies)
Discussion started by: nani2019
5 Replies
LEARN ABOUT DEBIAN
ptrepack
PTREPACK(1) General Commands Manual PTREPACK(1)
NAME
ptrepack - Copy any PyTables Leaf, Group or complete subtree into another file.
SYNOPSIS
ptrepack -h -v -o -R start,stop,step --non-recursive --dest-title=title --dont-copyuser-attrs --overwrite-nodes --complevel=(0-9) --com-
plib=lib --shuffle=(0|1) --fletcher32=(0|1) --keep-source-filters --upgrade-flavors --dont-regenerate-old-indexes sourcefile:sourcegroup
destfile:destgroup
DESCRIPTION
Copy any Leaf, Group or complete subtree from a PyTables file into another file.
OPTIONS
A summary of options is included below.
-h Prints a help text.
-v Show more information.
-o Overwite destination file.
-R RANGE
Select a RANGE of rows in the form start,stop,step during the copy of all the leaves.
--non-recursive
Do not do a recursive copy. Default is to do it.
--dest-title=title
Title for the new file (if not specified, the source is copied).
--dont-copy-userattrs
Do not copy the user attrs (default is to do it).
--overwrite-nodes
Overwrite destination nodes if they exist. Default is not to overwrite them.
--complevel=(0-9)
Set a compression level (0 for no compression, which is the default).
--complib=lib
Set the compression library to be used during the copy. lib can be set to "zlib", "lzo", "ucl" or "bzip2". Defaults to "zlib".
--shuffle=(0|1)
Activate or not the shuffling filter (default is active if complevel>0).
--fletcher32=(0|1)
Whether to activate or not the fletcher32 filter (not active by default).
--keep-source-filters
Use the original filters in source files. The default is not doing that if any of --complevel, --complib, --shuffle or --fletcher32
option is specified.
--upgrade-flavors
When repacking PyTables 1.x files, the flavor of leaves will be unset. With this, such a leaves will be serialized as objects with
the internal flavor ("numpy" for 2.x series).
--dont-regenerate-old-indexes
Disable regenerating old indexes. The default is to regenerate old indexes as they are found.
SEE ALSO
ptdump(1).
These utilities are documented fully by PyTables user's manual.
AUTHOR
This manual page was written by Francesc Altet <faltet@carabos.com>.
July 7, 2007 PTREPACK(1)