Sponsored Content
Top Forums Shell Programming and Scripting Reading multiple values from multiple lines and columns and setting them to unique variables. Post 302903036 by vgersh99 on Friday 23rd of May 2014 02:42:04 PM
Old 05-23-2014
Quote:
Originally Posted by FMMOLA
Wow using the first option I have got the exact thing I wanted. Thank you very much:
Code:
select HELIX1, /1DB1//A/125 - 143/
select HELIX2, /1DB1//A/149 - 153/
select HELIX3, /1DB1//A/216 - 224/
select HELIX4, /1DB1//A/226 - 247/
select HELIX5, /1DB1//A/250 - 254/
select HELIX6, /1DB1//A/255 - 275/
select HELIX7, /1DB1//A/290 - 292/
select HELIX8, /1DB1//A/296 - 302/
select HELIX9, /1DB1//A/306 - 323/
select HELIX10, /1DB1//A/326 - 339/
select HELIX11, /1DB1//A/348 - 371/
select HELIX12, /1DB1//A/378 - 406/
select HELIX13, /1DB1//A/410 - 414/
select HELIX14, /1DB1//A/415 - 423/

there was only a small modification needed to get the $pdbid and $ChainId values correctly.
Code:
 awk '{printf("select HELIX%d, /'$pdbid'//'$ChainId'/%d - %d/\n", FNR, $1,$2)}' myFile

a better approach:
Code:
awk '{printf("select HELIX%d, /%s//%s/%d - %d/\n", FNR, ,pd,chid,$1,$2)}' pd="${pdbid}" chid="${ChainId}" myFile

 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Awk match multiple columns in multiple lines in single file

Hi, Input 7488 7389 chr1.fa chr1.fa 3546 9887 chr5.fa chr9.fa 7387 7898 chrX.fa chr3.fa 7488 7389 chr21.fa chr3.fa 7488 7389 chr1.fa chr1.fa 3546 9887 chr9.fa chr5.fa 7898 7387 chrX.fa chr3.fa Desired Output 7488 7389 chr1.fa chr1.fa 2 3546 9887 chr5.fa chr9.fa 2... (2 Replies)
Discussion started by: jacobs.smith
2 Replies

2. Programming

Reading multiple columns in C++

Dear all, I am novice in C+= programing. I would like to seek help in one of the progra. Here it is, I have txt file which has the data as following order varA varB -21 0 -21.2 3, 4, 5, 6 -21.4 45, 65, 87, 98, 98 -22.0 345677, 349887, 98766, 877654, 987543 -23.0 76549,... (17 Replies)
Discussion started by: emily
17 Replies

3. Shell Programming and Scripting

Reading multiple values in while loop

I'm having trouble with a simple piece of code. IFS=, echo "1,2,3,4,5,6,7,8" | while read x y do echo "x=$x" echo "y=$y" done I'm hoping for x=1 y=2 x=3 y=4 . . . but I'm getting x=1 (3 Replies)
Discussion started by: sabbata
3 Replies

4. Shell Programming and Scripting

Add unique header to multiple lines

I have a file of lines with the following format: AACCCGTAGATCCGAACTTGTG ACCCGTAGATCCGAACTTGTG CCGTAGATCCGAACTTGTG CGTAGATCCGAACTTGT I want to give a header to each line, using awk, where the header is equal to the line that follows, like this: >AACCCGTAGATCCGAACTTGTG ... (2 Replies)
Discussion started by: Palgrave
2 Replies

5. Shell Programming and Scripting

[Solved] Counting The Number of Lines Between Values with Multiple Variables

Hey everyone, I have a bunch of lines with values in field 4 that I am interested in. If these values are between 1 and 3 I want it to count all these values to all be counted together and then have the computer print out LOW and the number of lines with those values in between 1 and 3,... (2 Replies)
Discussion started by: VagabondGold
2 Replies

6. Shell Programming and Scripting

Read record from the text file contain multiple separated values & assign those values to variables

I have a file containing multiple values, some of them are pipe separated which are to be read as separate values and some of them are single value all are these need to store in variables. I need to read this file which is an input to my script Config.txt file name, first path, second... (7 Replies)
Discussion started by: ketanraut
7 Replies

7. Shell Programming and Scripting

Count Unique values from multiple lists of files

Looking for a little help here. I have 1000's of text files within a multiple folders. YYYY/ /MM /1000's Files Eg. 2014/01/1000 files 2014/02/1237 files 2014/03/1400 files There are folders for each year and each month, and within each monthly folder there are... (4 Replies)
Discussion started by: whegra
4 Replies

8. UNIX for Dummies Questions & Answers

Reading multiple variables in a loop

Hi, I managed to read and print variable as shown in the below code. table_name=table1,table2,table3 i=0 IFS="," for i in $table_name do echo $i done Is there a way how I can read more than one variable. For example I need to read 2 variables and populate the output... (6 Replies)
Discussion started by: shash
6 Replies

9. Shell Programming and Scripting

Removing carriage returns from multiple lines in multiple files of different number of columns

Hello Gurus, I have a multiple pipe separated files which have records going over multiple Lines. End of line separator is \n and records going over multiple lines have <CR> as separator. below is example from one file. 1|ABC DEF|100|10 2|PQ RS T|200|20 3| UVWXYZ|300|30 4| GHIJKL|400|40... (7 Replies)
Discussion started by: dJHa
7 Replies

10. UNIX for Beginners Questions & Answers

Split into multiple files by using Unique columns in a UNIX file

I have requirement to split below file (sample.csv) into multiple files by using the unique columns (first 3 are unique columns) sample.csv 123|22|56789|ABCDEF|12AB34|2019-07-10|2019-07-10|443.3400|1|1 123|12|5679|BCDEFG|34CD56|2019-07-10|2019-07-10|896.7200|1|2... (3 Replies)
Discussion started by: RVSP
3 Replies
Select(3pm)						User Contributed Perl Documentation					       Select(3pm)

NAME
Coro::Select - a (slow but coro-aware) replacement for CORE::select SYNOPSIS
use Coro::Select; # replace select globally (be careful, see below) use Core::Select 'select'; # only in this module use Coro::Select (); # use Coro::Select::select DESCRIPTION
This module tries to create a fully working replacement for perl's "select" built-in, using "AnyEvent" watchers to do the job, so other threads can run in parallel to any select user. As many libraries that only have a blocking API do not use global variables and often use select (or IO::Select), this effectively makes most such libraries "somewhat" non-blocking w.r.t. other threads. This implementation works fastest when only very few bits are set in the fd set(s). To be effective globally, this module must be "use"'d before any other module that uses "select", so it should generally be the first module "use"'d in the main program. Note that overriding "select" globally might actually cause problems, as some "AnyEvent" backends use "select" themselves, and asking AnyEvent to use Coro::Select, which in turn asks AnyEvent will not quite work. You can also invoke it from the commandline as "perl -MCoro::Select". To override select only for a single module (e.g. "Net::DBus::Reactor"), use a code fragment like this to load it: { package Net::DBus::Reactor; use Coro::Select qw(select); use Net::DBus::Reactor; } Some modules (notably POE::Loop::Select) directly call "CORE::select". For these modules, we need to patch the opcode table by sandwiching it between calls to "Coro::Select::patch_pp_sselect" and "Coro::Select::unpatch_pp_sselect": BEGIN { use Coro::Select (); Coro::Select::patch_pp_sselect; require evil_poe_module_using_CORE::SELECT; Coro::Select::unpatch_pp_sselect; } BUGS
For performance reasons, Coro::Select's select function might not properly detect bad file descriptors (but relying on EBADF is inherently non-portable). SEE ALSO
Coro::LWP. AUTHOR
Marc Lehmann <schmorp@schmorp.de> http://home.schmorp.de/ perl v5.14.2 2012-04-13 Select(3pm)
All times are GMT -4. The time now is 01:00 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy