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Top Forums Shell Programming and Scripting To transpose columns + edit in a txt file Post 302902978 by Akshay Hegde on Friday 23rd of May 2014 10:04:03 AM
Old 05-23-2014
Also try:

Code:
$ awk '{$1=$1} NR==1 || $2 && gsub(/,/,RS $1 OFS)' OFS='\t' file 

log2FoldChange	        Ontology_term
8.50624450251828	GO:0003700
8.50624450251828	GO:0003707
8.50624450251828	GO:0005634
8.50624450251828	GO:0006355
....
....

---------- Post updated at 08:34 PM ---------- Previous update was at 08:29 PM ----------

remove NR==1 ||, if your file does not contain header..
 

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X2SYS_MERGE(1gmt)					       Generic Mapping Tools						 X2SYS_MERGE(1gmt)

NAME
x2sys_merge - Merge an updated COEs tables SYNOPSIS
x2sys_merge -Amain_COElist.d -Mnew_COElist.d DESCRIPTION
x2sys_merge will read two crossovers data base and output the contents of the main one updated with the COEs in the second one. The second file should only contain updated COEs relatively to the first one. That is, it MUST NOT contain any new two tracks intersections (This point is NOT checked in the code). This program is useful when, for any good reason like file editing NAV correction or whatever, one had to recompute only the COEs between the edited files and the rest of the database. -A Specify the file main_COElist.d with the main crossover error data base. -M Specify the file new_COElist.d with the newly computed crossover error data base. OPTIONS
No space between the option flag and the associated arguments. EXAMPLES To update the main COE_data.txt with the new COEs estimations saved in the smaller COE_fresh.txt, try x2sys_merge -ACOE_data.txt -MCOE_fresh.txt > COE_updated.txt SEE ALSO
x2sys_binlist(1), x2sys_cross(1), x2sys_datalist(1), x2sys_get(1), x2sys_init(1), x2sys_list(1), x2sys_put(1), x2sys_report(1) GMT 4.5.7 15 Jul 2011 X2SYS_MERGE(1gmt)
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