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Top Forums UNIX for Dummies Questions & Answers Outputting 1 file per row if pattern exists between files Post 302902741 by verse123 on Thursday 22nd of May 2014 02:48:21 AM
Old 05-22-2014
Outputting 1 file per row if pattern exists between files

I have many files that can have various amounts of rows. I essentially want to output each row into a new file if a pattern is matched between two files.

I have some code that does something similar but I want it to output every single input row from every file into a separate output file; that is, 1 output per row. The names of the output can be something like bat.1.outpu2_1, bat.1.output2_2, etc..

The input file can look like this for example:

Code:
 name,start,end
bat.1,231, 234
bat.1,230, 232


The file I want to match looks like this:

Code:
 V1 V2  V3 V4 V5    V6 V7 V8
  0 230 -77 -1  D     xx  0  0
  1 231 -77  0  R      tt  0  0
  2 232 -77  1  T     yy  0  0
  3 233 -76 -1  Y     uu  0  0
  4 234 -76  0  U     re  0  0
  5 235 -76  1  I      dd  0  0


the code I have to do this is :

Code:
[[ ! -d odir_30for ]] && mkdir odir_30for
for f in enriched_chunks/*.output
do
   infile=${f##*/}
   infile="${infile%[.]output}"
   awk '
   NR==2 { b=$2; e=$3+30;}
   NR>FNR {$0=" " $0; if (($2>=b) && ($2<=e)) o=o $6;}
   END {of=FILENAME; sub(".*/", "", of) ;  print of; print o}
   ' FS=, "$f" FS="[ \t]*" output_transcripts3/output2/"$infile" > odir_30for/"$infile".output2
done


how can I generate an output for each row in a file, for many files? Right now the above code will only output a single row.

output should look like this:

bat.1_1
Code:
bat.1_1
RTYU

bat.1_2
Code:
bat.1_2
DRT

 

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PS2EPSI(1)                                                       Ghostscript Tools                                                      PS2EPSI(1)

NAME
ps2epsi - generate conforming Encapsulated PostScript SYNOPSIS
ps2epsi infile.ps [ outfile.epsi ] (Unix) ps2epsi infile.ps [ outfile.epi ] (DOS) DESCRIPTION
ps2epsi uses gs(1) to process a PostScript(tm) file and generate as output a new file which conforms to Adobe's Encapsulated PostScript Interchange (EPSI) format. EPSI is a special form of encapsulated PostScript (EPS) which adds to the beginning of the file in the form of PostScript comments a bitmapped version of the final displayed page. Programs which understand EPSI (usually word processors or DTP pro- grams) can use this bitmap to give a preview version on screen of the PostScript. The displayed quality is often not very good (e.g., low resolution, no colours), but the final printed version uses the real PostScript, and thus has the normal PostScript quality. USAGE
On Unix systems invoke ps2epsi like this: ps2epsi infile.ps [ outfile.epsi ] where "infile.ps" is the input file and "outfile.epsi" is the resulting EPSI file. If the output filename is omitted, it is generated from the input filename. When a standard extension (".ps", ".cps", ".eps" or ".epsf") is used, it is replaced with the output extension ".epsi". On DOS systems the command is: ps2epsi infile.ps outfile.epi where "infile.ps" is the original PostScript file, and "outfile.epi" is the name of the output file. LIMITATIONS
Not every PostScript file can be encapsulated successfully, because there are restrictions on what PostScript constructs a correct encapsu- lated file may contain. ps2epsi does a little extra work to try to help encapsulation, and it automatically calculates the bounding box required for all encapsulated PostScript files, so most of the time it does a pretty good job. There are certain to be cases, however, where the encapsulation does not work because of the content of the original PostScript file. COMPATIBILITY
The Framemaker DTP system is one application which understands EPSI files, and ps2epsi has been tested on a number of PostScript diagrams from a variety of sources, using Framemaker 3.0 on a Sun workstation. Framemaker on other platforms should be able to use these files, although I have not been able to test this. FILES
ps2epsi Unix shell script ps2epsi.bat DOS batch file ps2epsi.ps the Ghostscript program which does the work SEE ALSO
gs (1) VERSION
This document was last revised for Ghostscript version 8.70. However, the content may be obsolete, or inconsistent with ps2epsi.txt. AUTHOR
George Cameron 8.70 31 July 2009 PS2EPSI(1)
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