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Full Discussion: Reading and appending a row from file1 to file2 using awk or sed
Top Forums Shell Programming and Scripting Reading and appending a row from file1 to file2 using awk or sed Post 302901825 by ida1215 on Friday 16th of May 2014 12:08:24 AM
Old 05-16-2014
Reading and appending a row from file1 to file2 using awk or sed
Hi, I wanted to add each row of file2.txt to entire length of file1.txt given the sample data below and save it as new file. Any idea how to efficiently do it. Thank you for any help.

Code:
input file
file1.txt   file2.txt
140 30    200006 141 32     
140 32    200006 142 33
140 35    200006 142 30
140 36
140 50

desired outputs:
outfile1.txt
140 30 200006 141 32
140 32 200006 141 32
140 35 200006 141 32
140 36 200006 141 32
140 50 200006 141 32

outfile2.txt
140 30 200006 142 33
140 32 200006 142 33
140 35 200006 142 33
140 36 200006 142 33
140 50 200006 142 33

outfile3.txt
140 30 200006 142 30
140 32 200006 142 30
140 35 200006 142 30
140 36 200006 142 30
140 50 200006 142 30

 

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LEARN ABOUT DEBIAN

seqfmt

SEQFMT(5)							   User Manuals 							 SEQFMT(5)

NAME

       seqfmt - Sequences formats

DESCRIPTION

       This document illustrates some common formats used for sequences representation.

       EMBL
	    ID	 MMVASPHOS  standard; RNA; EST; 140 BP.
	    AC	 X97897;
	    DE	 M.musculus mRNA for protein homologous to
	    DE	 vasodilator-stimulated phosphoprotein
	    SQ	 Sequence 140 BP; 25 A; 58 C; 39 G; 17 T; 1 other;
		 ttctcccaga agctgactct atggngaccc cgagagagac tgagcagaac      60
		 ccccgcaccc ctgcacttcc aatcaggggc gccccgggag cactccccgt     120
		 ccgccctccg cgcagccatg					    140
	    //

       FASTA
	    >MMVASPHOS
	    ttctcccagaagctgactctatggngaccccgagagagactgagcagaacctggagccag
	    ccccgcacccctgcacttccaatcaggggcgccccgggagcactccccgtggcgcgccgc
	    ccgccctccgcgcagccatg

       GCG
	    !!NA_SEQUENCE 1.0
	     (No documentation)
	    dna1.txt  Length: 88  Nov 22, 2001 14:38  Type: N  Check: 3818  ..

		   1  TAGTCGTAGT CGGAGCGATG CTGACGATGA CGATGACGAT CGTAGCTGAT

		  51  CGATCGAGCT GATGCTGATC GAGCTAGCTG ATCGATCG

       GDE
	    #sample1
	    TTCAAGAGAAACAGCGGCCAAGGAAAAGACTCGGCATGATTGTCCATAGCTTACAAAGCG
	    #sample2
	    TTCAAGAGAAACAGCGGCTGGGGGAAAGACTCGTCCTGATTGCCTGTAGATGGTAAAGCG

       GENBANK
	    LOCUS	HUMHBV1       130 bp	DNA	    PRI     17-JUN-1993
	    DEFINITION	Human DNA/endogenous Hepatitis B virus (HBV) DNA, left
			host viral junction.
	    ACCESSION	M15770
	    BASE COUNT	     32 a     43 c     29 g	26 t
	    ORIGIN
		  1 agcgggcagt gcagctgctt ggacagcagg ggtgtttctt caacccaggc
		 61 ctcctgtcac aacaggccca ttcaattctg aacctgcaag ccaactccaa
		121 cctcttttcc cagggggaac caaaaaccct
	    //

       IG
	    ; comment
	    U03518
	    AACCTGCGGAAGGATCATTACCGAGTGCGGGTCCTTTGGGCCCAACCTCCCATCCGTGTC
	    TATTGTACCCTGTTGCTTCGGCGGGCCCGCCGCTTGTCGGCCGCCGGGGGGGCGCCTCTG
	    TGAGTTGATTGAATGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGC1

       NBRF
	    >P1;CCHU
	    cytochrome c [validated] - human
	    MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIW
	    GEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE*

       PIR
	    ENTRY	   CCHU  #type complete
	    TITLE	   cytochrome c [validated] - human
	    ACCESSIONS	   A31764; A05676; I55192; A00001
	    SUMMARY	   #length 105	#molecular-weight 11749  #checksum 3247
	    SEQUENCE
			    5	     10        15	 20	   25	     30
		  1 M G D V E K G K K I F I M K C S Q C H T V E K G G K H K T G
		 31 P N L H G L F G R K T G Q A P G Y S Y T A A N K N K G I I W
		 61 G E D T L M E Y L E N P K K Y I P G T K M I F V G I K K K E
		 91 E R A D L I A Y L K K A T N E
	    ///

       RAW
	    ttctcccagaagctgactctatggngaccccgagagagactgagcagaacctggagccag
	    ccccgcacccctgcacttccaatcaggggcgccccgggagcactccccgtggcgcgccgc
	    ccgccctccgcgcagccatg

	   Warning: This format cannot handle more than one sequence per file.

       SWISSPROT
	    ID	 100K_RAT	STANDARD;      PRT;   149 AA.
	    AC	 Q62671;
	    DE	 100 kDa protein (EC 6.3.2.-).
	    SQ	 SEQUENCE   149 AA;  17004 MW;	D06484B8BC29112E CRC64;
		 MMSARGDFLN YALSLMRSHN DEHSDVLPVL DVCSLKHVAY VFQALIYWIK
		 PQLERKRTRE LLELGIDNED SEHENDDDTS QSATLNDKDD ESLPAETGQN
		 SITIRPPDDQ HLPTANTCIS RLYVPLYSSK QILKQKLLLA IKTKNFGFV
	    //

SEE ALSO

       squizz(1), alifmt(5)

AUTHOR

       Nicolas Joly (njoly@pasteur.fr), Institut Pasteur.

Unix								    2009-05-19								 SEQFMT(5)
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