Combining rdrxt1's suggestion with alister's remark and akshay's suggestion, an alternate version would be:
Which would be insensitive to spurious leading/trailing spaces in file1 . This may seem picky, but file1 is more likely to be a file that is edited manually, so space here or there is easily added by accident..
Wat does this command do?
fileA is a subset of fileB..now, i need to find the lines in fileB that are not in fileA...i.e fileA - fileB.
diff fileA fileB gives the ouput but the format looks no good....
I just need the contents alone not the line num etc. (7 Replies)
Hi
I started to learn bash a week ago. I need filter the strings from the last column of a "file2" that match with a column from an other "file1"
file1:
chr10100036394-100038350AK077761
chr10100041065-100046547AK032226
chr10100041065-100046547AK016270
chr10100041065-100046547AK078231
...... (6 Replies)
Hello,
I have two data files:
file1
12345 aa bbb cccc
98765 qq www uuuu
76543 pp rrr bbbbb
34567 nn ccc sssss
87654 qq ppp rrrrr
file2
98765
34567
I need to remove the lines from file1 if the first field contains a value that appears in file2:
output
12345 aa bbb cccc
76543 pp... (2 Replies)
Hi
I have to list of words file1 and file2, I want to compare both lists and remove from file2 all the words that don't exist in file1.
How can I do this?
Many thanks (4 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
Hi guys!
I'm trying to write something to find each line of file1 into file2, if line is found return YES, if not found return NO. The result can be written to a new file.
Can you please help me out?
FILE1 INPUT:
WATER
CAR
SNAKE
(in reality this file has about 600 lines each with a... (2 Replies)
HI,
I would like a little help on writing a if statement.
What i have so far is:
#!/bin/bash
FILE1=path/to/file1
FILE2=path/to/file2
echo ${FILE1} ${FILE2}
if ]
then
echo file1 and file2 not found
else
echo FILE ok
fi (6 Replies)
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
I am trying to use awk to find all the $2 values in file2 which is ~30MB and tab-delimited, that are between $2 and $3 in file1 which is ~2GB and tab-delimited.
I have just found out that I need to use $1 and $2 and $3 from file1 and $1 and $2of file2 must match $1 of file1 and be in the range... (6 Replies)
Hi
Does anyone know of an efficient way to index a column of data in file2 to print the coresponding row in file1 which corresponds to the data in file2 AND 30 rows preceding and after the row in file1.
For example suppose you have a list of numbers in file2 (single column) as follows:... (6 Replies)
Discussion started by: Geneanalyst
6 Replies
LEARN ABOUT MINIX
diff
DIFF(1) General Commands Manual DIFF(1)NAME
diff - print differences between two files
SYNOPSIS
diff [-c | -e | -C n] [-br]file1 file2
OPTIONS -C n Produce output that contains n lines of context
-b Ignore white space when comparing
-c Produce output that contains three lines of context
-e Produce an ed-script to convert file1 into file2
-r Apply diff recursively to files and directories of
EXAMPLES
diff file1 file2 # Print differences between 2 files
diff -C 0 file1 file2
# Same as above
diff -C 3 file1 file2
# Output three lines of context with every
diff -c file1 file2 # Same
diff /etc /dev # Compares recursively the directories /etc and /dev
diff passwd /etc # Compares ./passwd to /etc/passwd
DESCRIPTION
the same name, when file1 and file2 are both directories" difference encountered"
Diff compares two files and generates a list of lines telling how the two files differ. Lines may not be longer than 128 characters. If
the two arguments on the command line are both directories, diff recursively steps through all subdirectories comparing files of the same
name. If a file name is found only in one directory, a diagnostic message is written to stdout. A file that is of either block special,
character special or FIFO special type, cannot be compared to any other file. On the other hand, if there is one directory and one file
given on the command line, diff tries to compare the file with the same name as file in the directory directory.
SEE ALSO cdiff(1), cmp(1), comm(1), patch(1).
DIFF(1)