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Top Forums Shell Programming and Scripting Filter uniq field values (non-substring) Post 302900749 by alister on Thursday 8th of May 2014 12:59:41 PM
Old 05-08-2014
Quote:
Originally Posted by yifangt
I get it now, actually I have hundred thousand lines.
That's the type of information that should always be mentioned in the initial post. Please keep that in mind going forward.

Quote:
Originally Posted by yifangt
I just thought another scenario: Is possible to do with two columns? i.e. any substring of the same column (but need both col2 and col4 at the same time), should be skipped.
Code:
infile:
1 abcd    idx01    ijklm
2 abc    idx03    klm
3 abcd    idx05    jkl
4 cdef    idx06    ijklm
5 efgh    idx07    abcd
6 efg    idx09    abc
7 efx    idx11    abcd
8 fgh    idx12    bcd

Code:
output:
1 abcd    idx01    ijklm
4 cdef    idx06    ijklm
5 efgh    idx07    abcd
7 efx    idx11    abcd

I tried using two arrays to loop:
Code:
gawk '{for(i in a) {if (index(i,$2)) next; for(j in b) {if (index(j,$4)) next; if (index($2, i) && index($4, j)) delete a[i]}; a[$2]=$0; b[$4]=$4}} END {for (i in a) print a[i]}' a[$2]=$0} END {for (i in a) print a[i]}'  infile

But there was no output. The second loop seems of problem, any suggestions please? Thanks a lot!
I haven't given it much thought, but upon cursory examination, your logic is definitely very flawed. If i is in a, you jump to the next line. That's wrong. If I understood the task, before you can skip a line, both i must be in a and j must be in b.

Once included, if later lines prove that an earlier line's $2 and $4 are substrings, then that earlier line must be excluded. Note that an earlier line's $2 and $4 may be disqualified by different subsequent lines, so you must track that as well.

Was there some copy-paste malfunction in your post? There are two END sections, nearly identical, which doesn't make sense (multiple END pattern-action pairs are allowed, but in this case I don't see the point of them).

One simple, if not optimal, way to solve the problem is to handle each column individually and then join the results.

Regards,
Alister
 

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UNIQ(1) 							   User Commands							   UNIQ(1)

NAME
uniq - report or omit repeated lines SYNOPSIS
uniq [OPTION]... [INPUT [OUTPUT]] DESCRIPTION
Filter adjacent matching lines from INPUT (or standard input), writing to OUTPUT (or standard output). With no options, matching lines are merged to the first occurrence. Mandatory arguments to long options are mandatory for short options too. -c, --count prefix lines by the number of occurrences -d, --repeated only print duplicate lines -D, --all-repeated[=delimit-method] print all duplicate lines delimit-method={none(default),prepend,separate} Delimiting is done with blank lines -f, --skip-fields=N avoid comparing the first N fields -i, --ignore-case ignore differences in case when comparing -s, --skip-chars=N avoid comparing the first N characters -u, --unique only print unique lines -z, --zero-terminated end lines with 0 byte, not newline -w, --check-chars=N compare no more than N characters in lines --help display this help and exit --version output version information and exit A field is a run of blanks (usually spaces and/or TABs), then non-blank characters. Fields are skipped before chars. Note: 'uniq' does not detect repeated lines unless they are adjacent. You may want to sort the input first, or use `sort -u' without `uniq'. Also, comparisons honor the rules specified by `LC_COLLATE'. AUTHOR
Written by Richard M. Stallman and David MacKenzie. REPORTING BUGS
Report uniq bugs to bug-coreutils@gnu.org GNU coreutils home page: <http://www.gnu.org/software/coreutils/> General help using GNU software: <http://www.gnu.org/gethelp/> Report uniq translation bugs to <http://translationproject.org/team/> COPYRIGHT
Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. SEE ALSO
comm(1), join(1) The full documentation for uniq is maintained as a Texinfo manual. If the info and uniq programs are properly installed at your site, the command info coreutils 'uniq invocation' should give you access to the complete manual. GNU coreutils 8.5 February 2011 UNIQ(1)
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