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Top Forums UNIX for Dummies Questions & Answers Installing packages...need help with the basics Post 302899287 by drl on Monday 28th of April 2014 10:36:00 AM
Old 04-28-2014
Hi.

This thread is similar to one at Installing a command/program to a remote computer

Noted there is information from one source of fastq-dump that there are pre-compiled binaries for some platforms.

If I were you, I would practice installing to an area under my home directory on the Mac because when you go to the campus Linux cluster, you will not likely have adminstration rights there, so that you will need to do a number of tasks differently.

In addition, simply copying from the Mac to the Linux cluster will probably not work. You could test this out beforhand by copying, say the Mac version of system command ls to your home directory on the Linux cluster and try to execute it. Mac hardware is (now) Intel, but the OS is essentailly FreeBSD, and I don't see that as running under Linux. Here's an example: I copied /bin/ls from a PCBSD machine to a Debian machine:
Code:
OS, ker|rel, machine: FreeBSD, 9.2-RELEASE-p8, amd64

OS, ker|rel, machine: Linux, 3.2.0-4-amd64, x86_64
Distribution        : Debian 7.4 (wheezy, workstation-vm)

working with that file on the original machine:
Code:
$ cp /bin/ls ~
$ ls -ln ./ls
-r-xr-xr-x  1 1001  1001  32256 Apr 28 09:26 ./ls
$ file ./ls
./ls: ELF 64-bit LSB executable, x86-64, version 1 (FreeBSD), dynamically linked (uses shared libs), for FreeBSD 9.2, stripped
$ ./ls
Desktop		Music		Videos		log		try
...

transferring and working with that file ls on Debian::
Code:
$ ls -lgG ./ls
-r-xr-xr-x 1 32256 Apr 28 09:21 ./ls*
$ file ./ls
./ls: ELF 64-bit LSB executable, x86-64, version 1 (FreeBSD), dynamically linked (uses shared libs), for FreeBSD 9.2, stripped
$ ./ls
-bash: ./ls: No such file or directory

However, I do not know from where you are getting fastq-dump, so things might be different for you.

Best wishes ... cheers, drl
 

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GO-BUILD(1)						      General Commands Manual						       GO-BUILD(1)

NAME
go - tool for managing Go source code SYNOPSIS
go build [-o output] [ build flags ] [ packages ] DESCRIPTION
Build compiles the packages named by the import paths, along with their dependencies, but it does not install the results. If the arguments are a list of .go files, build treats them as a list of source files specifying a single package. When the command line specifies a single main package, build writes the resulting executable to output. Otherwise build compiles the pack- ages but discards the results, serving only as a check that the packages can be built. The -o flag specifies the output file name. If not specified, the name is packagename.a (for a non-main package) or the base name of the first source file (for a main package). OPTIONS
The build flags are shared by the build, install, run, and test commands: -a force rebuilding of packages that are already up-to-date. -n print the commands but do not run them. -p n the number of builds that can be run in parallel. The default is the number of CPUs available. -v print the names of packages as they are compiled. -work print the name of the temporary work directory and do not delete it when exiting. -x print the commands. -compiler name name of compiler to use, as in runtime.Compiler (gccgo or gc) -gccgoflags 'arg list' arguments to pass on each gccgo compiler/linker invocation -gcflags 'arg list' arguments to pass on each 5g, 6g, or 8g compiler invocation -ldflags 'flag list' arguments to pass on each 5l, 6l, or 8l linker invocation -tags 'tag list' a list of build tags to consider satisfied during the build. See the documentation for the go/build package for more information about build tags. For more about specifying packages, see go-packages(7). For more about where packages and binaries are installed, see go-gopath(1). SEE ALSO
go-install(1), go-get(1), go-clean(1). AUTHOR
This manual page was written by Michael Stapelberg <stapelberg@debian.org>, for the Debian project (and may be used by others). 2012-05-13 GO-BUILD(1)
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