04-28-2014
Assigning matched pattern within filename to variable
I am writing a bash script where I use two types of files that both contain a numerical pattern of the type 123.4567 (always groups of three and four digits separated by period) within their filenames. I need to assign the numerical patterns of these filenames to variables (inside a for loop), so that I can perform an action only if two files match. I have been trying to use grep, find or sed, but can't seem to find a way to search the filenames only (these are big files), and to match/export this pattern only. Any help would be greatly appreciated by this bash scripting newbie!
Example filenames:
Scan_562.2416.faa.txt
Anno_562.2416.txt
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LID(1) User Commands LID(1)
NAME
lid - Query ID database and report results
SYNOPSIS
lid [OPTION]... PATTERN...
DESCRIPTION
Query ID database and report results. By default, output consists of multiple lines, each line containing the matched identifier followed
by the list of file names in which it occurs.
-f, --file=FILE
file name of ID database
-i, --ignore-case
match PATTERN case insensitively
-l, --literal
match PATTERN as a literal string
-r, --regexp
match PATTERN as a regular expression
-w, --word
match PATTERN as a delimited word
-s, --substring
match PATTERN as a substring
Note: If PATTERN contains extended regular expression metacharacters, it is interpreted as a regular expression substring. Other-
wise, PATTERN is interpreted as a literal word.
-k, --key=STYLE
STYLE is one of `token', `pattern' or `none'
-R, --result=STYLE
STYLE is one of `filenames', `grep', `edit' or `none'
-S, --separator=STYLE
STYLE is one of `braces', `space' or `newline' and only applies to file names when `--result=filenames'
The above STYLE options control how query results are presented. Defaults are --key=token --result=filenames --separator=space
-F, --frequency=FREQ
find tokens that occur FREQ times, where FREQ is a range expressed as `N..M'. If N is omitted, it defaults to 1, if M is omitted it
defaults to MAX_USHRT
-a, --ambiguous=LEN
find tokens whose names are ambiguous for LEN chars
-x, --hex
only find numbers expressed as hexadecimal
-d, --decimal
only find numbers expressed as decimal
-o, --octal
only find numbers expressed as octal
By default, searches match numbers of any radix.
--help display this help and exit
--version
output version information and exit
REPORTING BUGS
Report bugs to bug-idutils@gnu.org
lid - 4.5 August 2012 LID(1)