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Top Forums Shell Programming and Scripting Making a composite file of transposed columns Post 302898573 by LMHmedchem on Tuesday 22nd of April 2014 06:40:13 PM
Old 04-22-2014
This seems to work, but I still need to do some checking,
Code:
#!/bin/bash

FILELIST=$(ls './'*'.out.txt')

awk 'FNR==1 && FNR!=NR{print x;next} FNR==2{printf $1;next} FNR>2{printf("%s%s", OFS, $2)}END {print}' $FILELIST > _out.txt

The last row seems to have a problem. This is the input file for that row,
Code:
filePath	distance
{[3-(dimethylamino)propyl]amino}-N-naphthylcarboxamide	0.0
cyheptamide	0.0653914864686
oxyphenbutazone	0.0757147160492
melatonin	0.0870885855315
doxylamine	0.0925023853048
pyrilamine	0.0959876565376
tripelennamine	0.0978033137399
fentanyl	0.102771505703
R-apocodeine	0.103639227882
deacetyldiltiazem	0.104552836744
acepromazine	0.107673347298
diphenhydramine	0.110669230413
nefopam	0.110982685756
propiomazine	0.120416954487
desipramine	0.122117385721
benzydamine	0.124971244941
isoxsuprine	0.127177834512
propranolol	0.131049138037
promazine	0.132307894169
cinchonine	0.133675134701
dimefline	0.134699085898
nortriptyline	0.136270819322
benzphetamine	0.137019529216
imipramine	0.140966900695
ractopamine	0.14360602345
apomorphine	0.146103096076

and this is the output row,
{[3-(dimethylamino)propyl]amino}-N-naphthylcarboxamide 0.065391486 0.075714716 0.087088586 0.092502385 0.095987657 0.097803314 0.102771506 0.103639228 0.104552837 0.107673347 0.11066923 0.110982686 0.120416954 0.122117386 0.124971245 0.127177835 0.131049138 0.132307894 0.133675135 0.134699086 0.136270819 0.137019529 0.140966901 0.143606023 0.146103096076apomorphine

You can see that the text from column 1 has gotten into the value somehow.

LMHmedchem
 

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DB2_FETCH_ASSOC(3)							 1							DB2_FETCH_ASSOC(3)

db2_fetch_assoc - Returns an array, indexed by column name, representing a row in a result set

SYNOPSIS
array db2_fetch_assoc (resource $stmt, [int $row_number = -1]) DESCRIPTION
Returns an array, indexed by column name, representing a row in a result set. PARAMETERS
o $stmt - A valid stmt resource containing a result set. o $row_number - Requests a specific 1-indexed row from the result set. Passing this parameter results in a PHP warning if the result set uses a forward-only cursor. RETURN VALUES
Returns an associative array with column values indexed by the column name representing the next or requested row in the result set. Returns FALSE if there are no rows left in the result set, or if the row requested by $row_number does not exist in the result set. EXAMPLES
Example #1 Iterating through a forward-only cursor If you call db2_fetch_assoc(3) without a specific row number, it automatically retrieves the next row in the result set. <?php $sql = "SELECT id, name, breed, weight FROM animals ORDER BY breed"; $stmt = db2_prepare($conn, $sql); $result = db2_execute($stmt); while ($row = db2_fetch_assoc($stmt)) { printf ("%-5d %-16s %-32s %10s ", $row['ID'], $row['NAME'], $row['BREED'], $row['WEIGHT']); } ?> The above example will output: 0 Pook cat 3.20 5 Rickety Ride goat 9.70 2 Smarty horse 350.00 Example #2 Retrieving specific rows with db2_fetch_assoc(3) from a scrollable cursor If your result set uses a scrollable cursor, you can call db2_fetch_assoc(3) with a specific row number. The following example retrieves every other row in the result set, starting with the second row. <?php $sql = "SELECT id, name, breed, weight FROM animals ORDER BY breed"; $result = db2_exec($stmt, $sql, array('cursor' => DB2_SCROLLABLE)); $i=2; while ($row = db2_fetch_assoc($result, $i)) { printf ("%-5d %-16s %-32s %10s ", $row['ID'], $row['NAME'], $row['BREED'], $row['WEIGHT']); $i = $i + 2; } ?> The above example will output: 0 Pook cat 3.20 5 Rickety Ride goat 9.70 2 Smarty horse 350.00 SEE ALSO
db2_fetch_array(3), db2_fetch_both(3), db2_fetch_object(3), db2_fetch_row(3), db2_result(3). PHP Documentation Group DB2_FETCH_ASSOC(3)
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