Sponsored Content
Top Forums Shell Programming and Scripting How to loop script for multiple file? Post 302898345 by bartus11 on Monday 21st of April 2014 03:06:05 PM
Old 04-21-2014
Try:
Code:
for i in /path/*.rnk; do java -jar commands -res $i -out ${i%.*} -gui false; done

These 3 Users Gave Thanks to bartus11 For This Post:
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Foreach loop to run a perl script on multiple files

Hi, I have thousands of files in a directory that have the following 2 formats: 289620178.aln 289620179.aln 289620180.aln 289620183.aln 289620184.aln 289620185.aln 289620186.aln 289620187.aln 289620188.aln 289620189.aln 289620190.aln 289620192.aln.... and: alnCDS_1.fasta (1 Reply)
Discussion started by: greptastic
1 Replies

2. UNIX for Dummies Questions & Answers

Writing a loop to manipulate a script and store it in multiple output files

I have a script where the the 9th line looks like this: $filename=sprintf("250.1chr%d.ped", $N); I want to modify this script 1000 times, changing 250.1chr%d.ped to 250.2chr%d.ped, 250.3chr%.ped.......and so on all the way to 250.1000chr%d.ped and store each output in files called ... (4 Replies)
Discussion started by: evelibertine
4 Replies

3. UNIX for Dummies Questions & Answers

Writing a loop to process multiple input files by a shell script

I have multiple input files that I want to manipulate using a shell script. The files are called 250.1 through 250.1000 but I only want the script to manipulate 250.300 through 250.1000. Before I was using the following script to manipulate the text files: for i in 250.*; do || awk... (4 Replies)
Discussion started by: evelibertine
4 Replies

4. UNIX for Dummies Questions & Answers

Using Shell Script To Loop Program Through Multiple Text Files

Hello, So I have approximately 300 files of raw data (.txt) files that I am using to perform statistical analysis. I have been able to construct a Fortran program that is able to perform my statistical analysis on a file by file basis. However, I now want to be able to loop program through... (19 Replies)
Discussion started by: Jimmyd24
19 Replies

5. Shell Programming and Scripting

While loop reading file with multiple conditions

Hi Am trying to print the PIDs of process in a file and trying to grep any PID from that file I set the if condition as $value != "PID" and $value != "-" Assign that number to a variable Am confused since am using while loop to read the line from file and again if condition to check those... (2 Replies)
Discussion started by: Priya Amaresh
2 Replies

6. Shell Programming and Scripting

Reset while loop to loop same file multiple times

Hi, I want to read file multiple times. Right now i am using while loop but that is not working. ex. While read line do while read line2 do echo stmt1 #processing some data based on data., done < file2.txt done < file1.txt # This will have 10... (4 Replies)
Discussion started by: tmalik79
4 Replies

7. UNIX for Dummies Questions & Answers

How to remove first few characters from multiple file names without do loop?

Hi Fellows, I was wondering how I can remove first few characters from multiple file names without do loop in unix? e.g. water123.xyz water456.xyz to 123.xyz 456.xyz Thanks Paul Thanks. (3 Replies)
Discussion started by: Paul Moghadam
3 Replies

8. Shell Programming and Scripting

Execution of loop :Splitting a single file into multiple .dat file

hdr=$(cut -c1 $path$file|head -1)#extract header”H” trl=$(cut -c|path$file|tail -1)#extract trailer “T” SplitFile=$(cut -c 50-250 $path 1$newfile |sed'$/ *$//' head -1')# to trim white space and extract table name If; then # start loop if it is a header While read I #read file Do... (4 Replies)
Discussion started by: SwagatikaP1
4 Replies

9. Shell Programming and Scripting

Loop multiple directory, find a file and send email

Hello ALL, need a BASH script who find file and send email with attachment. I have 50 folders without sub directories in each generated files of different sizes but with a similar name Rp01.txt Rp02.txt Rp03.txt ...etc. Each directors bound by mail group, I need a script that goes as... (1 Reply)
Discussion started by: penchev
1 Replies

10. Shell Programming and Scripting

Loop through multiple files in bash script

Hi Everybody, I'm a newbie to shell scripting, and I'd appreciate some help. I have a bunch of .txt files that have some unwanted content. I want to remove lines 1-3 and 1028-1098. #!/bin/bash for '*.txt' in <path to folder> do sed '1,3 d' "$f"; sed '1028,1098 d' "$f"; done I... (2 Replies)
Discussion started by: BabyNuke
2 Replies
JAVA-WRAPPERS(7)						   Java wrappers						  JAVA-WRAPPERS(7)

NAME
java-wrappers - capacities shared by java wrapper scripts DESCRIPTION
Most Java programs are not run directly, but through small shell scripts that take care of various things, such as finding a suitable java environment and looking for libraries. To ease the task of the maintainers, they rely on a library providing runtime detection, library detection and other features. This manual page describes the common features of all those scripts, and to which point you can configure them. This is mainly done via environment variables. ENVIRONMENT VARIABLES
java-wrappers understands some environment variables: JAVA_CMD The java command that will be run. If this variable is set, it disables all lookup for a java runtime. JAVA_BINDIR Specifies a directory that will be looked for a java or a jdb executable (depending on the setting of JAVA_DEBUGGER). It has prece- dence over JAVA_HOME but not over JAVA_CMD. JAVA_HOME A path to a java runtime. If this variable is set, all lookup for a java runtime is disabled, except that if no java executable is found in the path, the command java is used. JAVA_FLAVOR A probably more easy-to-use version of the JAVA_HOME variable: instead of specifying the full path of the java runtime, you name it. List of available flavors can be found in the file /usr/lib/java-wrappers/jvm-list.sh. See examples below. JAVA_DEBUGGER If this is set, the wrapper will try to pick up a java debugger rather than a java interpreter. This will fail if the jbd of the runtime found is a stub. JAVA_CLASSPATH Additional classpath, will have priority over the one found by the wrapper. JAVA_ARGS Additional arguments to the java command. They will come before all other arguments. FORCE_CLASSPATH If this variable is set, it will be the only classpath. You'd better know what you are doing. DEBUG_WRAPPER This is probably the most important variable; if it set, the wrapper will print out useful information as it goes by its business, such as which runtime it did find, and which command is run eventually. JAVA_JARPATH The path where the wrappers will go looking for jar archives. If not set, the wrapper will look into the default directory, /usr/share/java. Warning : the wrapper will not look anywhere else than in JAVA_JARPATH. Setting it incorrectly will most probably result in early crashes. EXAMPLES
The examples all rely on rasterizer(1), from the package libbatik-java, but they really apply to all scripts that use java-wrappers. Print out debugging information: DEBUG_WRAPPER=1 rasterizer Limit rasterizer's memory to 80 MB: JAVA_ARGS=-Xmx80m rasterizer Force rasterizer to run with kaffe(1): JAVA_HOME=/usr/lib/kaffe rasterizer The same, but using JAVA_BINDIR: JAVA_BINDIR=/usr/lib/kaffe/bin rasterizer Force rasterizer to run with openjdk: JAVA_FLAVOR=openjdk rasterizer Debug rasterizer with Sun's debugger, while printing debugging information from the wrapper: DEBUG_WRAPPER=1 JAVA_CMD=/usr/lib/jvm/java-6-sun/bin/jdb rasterizer BUGS
Care has been taken to make the wrappers bug-free. If that was not the case, please file a bug report against the java-wrappers package. If you wish to submit any problem with a java executable relying on java-wrappers, please also submit the output of the command run with DEBUG_WRAPPER=1. It will save one mail exchange and therefore potentially reduce the time it takes to fix the bug. DEVELOPERS
There is currently no documentation about writing a wrapper script save the comments in /usr/lib/java-wrappers/java-wrappers.sh. If you have to write one, we suggest you base yourself upon, for instance, the rasterizer wrapper script, or any other one (just pick up any direct reverse dependency of java-wrappers and look for scripts). SEE ALSO
java(1), jdb(1) /usr/lib/java-wrappers/java-wrappers.sh AUTHOR
java-wrappers and its documentation were written by Vincent Fourmond <fourmond@debian.org> Version 0.1.16 2010-05-04 JAVA-WRAPPERS(7)
All times are GMT -4. The time now is 06:59 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy