<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD esummary gtr 20140110//EN" "http://eutils.ncbi.nlm.nih.gov/eutils/dtd/20140110/esummary_gtr.dtd">
<eSummaryResult>
<DocumentSummarySet status="OK">
<DbBuild>Build140417-0530.1</DbBuild>
<DocumentSummary uid="508680">
<Id>508680</Id>
<Source>GTR</Source>
<Accession>GTR000508680</Accession>
<TestName>Whole Exome Sequencing</TestName>
<TestType>Clinical</TestType>
<ConditionList>
<Condition>
<Name>Intellectual functioning disability</Name>
<Acronym></Acronym>
<CUI>C0025362</CUI>
</Condition>
</ConditionList>
<Analytes>
</Analytes>
<GeneList>
</GeneList>
<Offerer>Baylor Medical Genetics Laboratories Baylor College of Medicine</Offerer>
<OffererLocation>
<Line1> 2450 Holcombe, Grand Blvd. - Sample Receiving Dock</Line1>
<Line2></Line2>
<Line3></Line3>
<City>Houston</City>
<State>Texas</State>
<PostCode>77021-2024</PostCode>
<Country>United States</Country>
</OffererLocation>
<OffererID>1006</OffererID>
<DirectorList>
<string>Sarah Elsea, PhD, ABMG, FACMG, Diplomate of the American Board of Medical Genetics, Lab Director</string>
<string>Christine Eng, MD, ABMG, FACMG, Diplomate of the American Board of Medical Genetics, Medical Director, Laboratory Director</string>
<string>Marilyn Li, MD, ABMG, Diplomate of the American Board of Medical Genetics, Lab Director</string>
<string>Ankita Patel, PhD, ABMG, Diplomate of the American Board of Medical Genetics, Lab Director</string>
<string>Lee-Jun Wong, PhD, ABMG, Diplomate of the American Board of Medical Genetics, Lab Director</string>
</DirectorList>
<Summary></Summary>
<Flags>
</Flags>
<Method>
<TopCategory>
<Name>Molecular Genetics</Name>
<CategoriesString>_C_______________</CategoriesString>
<CategoryList>
<Category>
<Name>Sequence analysis of the entire coding region</Name>
<Code>C</Code>
<MethodList>
<string>Next-Generation (NGS)/Massively parallel sequencing (MPS)</string>
</MethodList>
</Category>
</CategoryList>
</TopCategory>
</Method>
<AnalyticalValidity>Sensitivity 97%</AnalyticalValidity>
<TargetPopulation></TargetPopulation>
<Certifications>
<Certification>
<CertificationType>MD - Maryland Department of Health and Mental Hygiene DHMH</CertificationType>
<id>1419</id>
</Certification>
<Certification>
<CertificationType>NY - New York State Department of Health NYSDOH</CertificationType>
<id>PFI-4584 Code 844052A2</id>
</Certification>
<Certification>
<CertificationType>FL - Florida Agency for Health Care Administration AHCA</CertificationType>
<id>L800012320</id>
</Certification>
<Certification>
<CertificationType>RI - State of Rhode Island Department of Health RIDOH</CertificationType>
<id>LCO00545</id>
</Certification>
<Certification>
<CertificationType>CLIA</CertificationType>
<id>45D0660090</id>
</Certification>
<Certification>
<CertificationType>CAP</CertificationType>
<id>2109314</id>
</Certification>
</Certifications>
<StudyDesc></StudyDesc>
<TestTargetList>
<string>Human genome</string>
<string>Whole exome</string>
</TestTargetList>
<ConditionCount>1</ConditionCount>
<TestTargetCount>2</TestTargetCount>
<Extra><![CDATA[]]></Extra>
</DocumentSummary>
</DocumentSummarySet>
</eSummaryResult>
Hi,
I'm looking for an "easy" way to parse a xml file to a proper structure.
The xml looks like this
What shall I use? Does anybody has some example-code to share or some good links/book-references?
thx for any reply
-fe (5 Replies)
I need to know the way. I have got parsing down some nodes. But I was unable to get the child node perfectly. If you have code please send it. It will be very useful for me. (0 Replies)
Hi,
I need to parse the following XML data enclosed in <a> </a> XML tag using shell script.
<X>
.....
</X>
<a>
<b>
<c>data1</c>
<c>data2</c>
</b>
<d>
<c>data3</c>
</d>
</a>
<XX>
...
</XX> (5 Replies)
I have an task definition listing xml file that contains a list of tasks such as
<TASKLIST
<TASK definition="Completion date" id="Taskname1" Some other
<CODE name="Code12"
<Parameter pname="Dog" input="5.6" units="feet" etc /Parameter>
<Parameter... (3 Replies)
Hi all!
I'm looking to write a quick script and in it I need to request an XML file from a service running on localhost and parse that XML file and output it. I'm looking to do it in bash although it doesn't really matter what shell it is in. The XML file returned would look like this:
... (3 Replies)
Hello all, I have been asked to exercise my shell scripting and it has been 10 plus years since I used to do it so I can not remember hardly anything and ask for your help.
What I need to do is copy a line out of a file that can be 10 to 100 characters long, I then need to parse this line into... (3 Replies)
Hi
I am having an xml file with lines like these
<d name="T2tt_350_100" title="T2tt_012j_350_100_428p4_pPF_PU" add="1" color="4" ls="1" lw="2" normf="1" xsection="0.070152" EqLumi="94651.6"... (2 Replies)
Hi All,
I want to parse XML to extract values of the tags to do further processing. The XML looks like
<?xml version="1.0" encoding="ISO-8859-1"?>
<allinput>
<input A="2389906" B="install">
<C>111</C>
<D>222</D>
<E>333</E>
<F></F>
<G>444</G>
<H></H>
<I></I>
<J></J>
<K>C,D,E,G</K>... (6 Replies)
Hi ,
I have a XML file like below
file name : sample.xml
<?xml version="1.0"?>
<catalog>
<author>Rajini</author>
<title>XML Guide</title>
<Text> </Text>
<genre>Computer</genre>
<price>44.95</price>
</catalog>
<?xml version="1.0"?>
<catalog>
... (5 Replies)