04-01-2014
Trim string1 end as far as concatenated new + string2 still contains string1?
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LEARN ABOUT DEBIAN
sim2gff
SIM2GFF(1) General Commands Manual SIM2GFF(1)
NAME
sim2gff - Converts SIM file into GFF formatted records
SYNOPSIS
sim2gff [-frxyHh] sim_file > gff_file
DESCRIPTION
This manual page documents briefly the sim2gff command.
sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).
OPTIONS
-h, --help
Show summary of options.
-f Output is written to a file named <sim_file>.gff.
-r Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis).
-x <name>
Specify the species name for species1 (default: "Seq1").
-y <name>
Specify the species name for species2 (default: "Seq2").
-H Use the fasta file headers for species labels.
EXIT STATUS
The following perl-like exit status are returned:
0 Error
1 Successful completion
SEE ALSO
ali2gff(1), blat2gff(1), gff2aplot(1), parseblast(1).
AUTHOR
sim2gff was written by Thomas Wiehe <twiehe@imb-jena.de>.
This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others).
Mon, 21 Mar 2005 21:44:15 -0300 SIM2GFF(1)