@ahamed, there would be an issue if $16=0, also there was an issue with BSD awk which did not print everything.. Rearranging your script like this, worked though:
This User Gave Thanks to Scrutinizer For This Post:
Hi all,
I have a huge csv file with the following format of data,
Num SNPs, 549997
Total SNPs,555352
Num Samples, 157
SNP, SampleID, Allele1, Allele2
A001,AB1,A,A
A002,AB1,A,A
A003,AB1,A,A
...
...
...
I would like to write out a list of unique SNP (column 1). Could you... (3 Replies)
Hi All,
I have a file which is having 3 columns as (string string integer)
a b 1
x y 2
p k 5
y y 4
.....
.....
Question:
I want get the unique value of column 2 in a sorted way(on column 2) and the sum of the 3rd column of the corresponding rows. e.g the above file should return the... (6 Replies)
I have a text file where the second column is a list of numbers going from small to large. I want to extract the rows where the second column is smaller than or equal to 0.0001.
My input:
rs10082730 9e-08 12 46002702
rs2544081 1e-07 12 46015487
rs1425136 1e-06 7 35396742
rs2712590... (1 Reply)
I have a space delimited text file. I want to extract rows where the third column has 0 as a value and write those rows into a new space delimited text file. How do I go about doing that? Thanks! (2 Replies)
I have a file containing data like so:
2012-01-02 GREEN 4
2012-01-02 GREEN 6
2012-01-02 GREEN 7
2012-01-02 BLUE 4
2012-01-02 BLUE 3
2012-01-02 GREEN 4
2012-01-02 RED 4
2012-01-02 RED 8
2012-01-02 GREEN 4
2012-01-02 YELLOW 5
2012-01-02 YELLOW 2
I can't always predict what the... (4 Replies)
Hi all,
I am new to shell script.I need your help to write a shell script.
I need to write a shell script to extract data from a .csv file where columns are ',' separated.
The file has 5 columns having values say column 1,column 2.....column 5 as below along with their valuesm.... (3 Replies)
cat sample.csv
ID,Name,no
1,AAA,1
2,BBB,1
3,AAA,1
4,BBB,1
cut -d',' -f2 sample.csv | sort | uniq
this gives only the 2nd column values
Name
AAA
BBB
How to I get all the columns of CSV along with this? (1 Reply)
Hi would like to ask you guys any advise regarding my problem
I have this kind of data
file.txt
111111111,20
111111111,50
222222222,70
333333333,40
444444444,10
444444444,20
I need to get this
file1.txt
111111111,70
222222222,70
333333333,40
444444444,30
using this code I can... (6 Replies)
Hi All,
Does anyone have any suggestions/examples of how i could show only lines where the first field is not duplicated. If the first field is listed more than once it shouldnt be shown even if the other columns make it unique.
Example file :
876,RIBDA,EC2
876,RIBDH,EX7
877,RIBDF,E28... (4 Replies)
What is an efficient way of counting the number of unique values in a 400 column by 1000 row array and outputting the counts per column, assuming the unique values in the array are:
A, B, C, D
In other words the output should look like: Value COL1 COL2 COL3
A 50 51 52... (16 Replies)
Discussion started by: Geneanalyst
16 Replies
LEARN ABOUT REDHAT
col
COL(1) BSD General Commands Manual COL(1)NAME
col -- filter reverse line feeds from input
SYNOPSIS
col [-bfpx] [-l num]
DESCRIPTION
Col filters out reverse (and half reverse) line feeds so the output is in the correct order with only forward and half forward line feeds,
and replaces white-space characters with tabs where possible. This can be useful in processing the output of nroff(1) and tbl(1).
Col reads from standard input and writes to standard output.
The options are as follows:
-b Do not output any backspaces, printing only the last character written to each column position.
-f Forward half line feeds are permitted (``fine'' mode). Normally characters printed on a half line boundary are printed on the follow-
ing line.
-p Force unknown control sequences to be passed through unchanged. Normally, col will filter out any control sequences from the input
other than those recognized and interpreted by itself, which are listed below.
-x Output multiple spaces instead of tabs.
-lnum Buffer at least num lines in memory. By default, 128 lines are buffered.
The control sequences for carriage motion that col understands and their decimal values are listed in the following table:
ESC-7 reverse line feed (escape then 7)
ESC-8 half reverse line feed (escape then 8)
ESC-9 half forward line feed (escape then 9)
backspace moves back one column (8); ignored in the first column
carriage return (13)
newline forward line feed (10); also does carriage return
shift in shift to normal character set (15)
shift out shift to alternate character set (14)
space moves forward one column (32)
tab moves forward to next tab stop (9)
vertical tab reverse line feed (11)
All unrecognized control characters and escape sequences are discarded.
Col keeps track of the character set as characters are read and makes sure the character set is correct when they are output.
If the input attempts to back up to the last flushed line, col will display a warning message.
SEE ALSO expand(1), nroff(1), tbl(1)STANDARDS
The col utility conforms to the Single UNIX Specification, Version 2. The -l option is an extension to the standard.
HISTORY
A col command appeared in Version 6 AT&T UNIX.
BSD June 17, 1991 BSD