Hi all,
I have a huge csv file with the following format of data,
Num SNPs, 549997
Total SNPs,555352
Num Samples, 157
SNP, SampleID, Allele1, Allele2
A001,AB1,A,A
A002,AB1,A,A
A003,AB1,A,A
...
...
...
I would like to write out a list of unique SNP (column 1). Could you... (3 Replies)
Hi All,
I have a file which is having 3 columns as (string string integer)
a b 1
x y 2
p k 5
y y 4
.....
.....
Question:
I want get the unique value of column 2 in a sorted way(on column 2) and the sum of the 3rd column of the corresponding rows. e.g the above file should return the... (6 Replies)
I have a text file where the second column is a list of numbers going from small to large. I want to extract the rows where the second column is smaller than or equal to 0.0001.
My input:
rs10082730 9e-08 12 46002702
rs2544081 1e-07 12 46015487
rs1425136 1e-06 7 35396742
rs2712590... (1 Reply)
I have a space delimited text file. I want to extract rows where the third column has 0 as a value and write those rows into a new space delimited text file. How do I go about doing that? Thanks! (2 Replies)
I have a file containing data like so:
2012-01-02 GREEN 4
2012-01-02 GREEN 6
2012-01-02 GREEN 7
2012-01-02 BLUE 4
2012-01-02 BLUE 3
2012-01-02 GREEN 4
2012-01-02 RED 4
2012-01-02 RED 8
2012-01-02 GREEN 4
2012-01-02 YELLOW 5
2012-01-02 YELLOW 2
I can't always predict what the... (4 Replies)
Hi all,
I am new to shell script.I need your help to write a shell script.
I need to write a shell script to extract data from a .csv file where columns are ',' separated.
The file has 5 columns having values say column 1,column 2.....column 5 as below along with their valuesm.... (3 Replies)
cat sample.csv
ID,Name,no
1,AAA,1
2,BBB,1
3,AAA,1
4,BBB,1
cut -d',' -f2 sample.csv | sort | uniq
this gives only the 2nd column values
Name
AAA
BBB
How to I get all the columns of CSV along with this? (1 Reply)
Hi would like to ask you guys any advise regarding my problem
I have this kind of data
file.txt
111111111,20
111111111,50
222222222,70
333333333,40
444444444,10
444444444,20
I need to get this
file1.txt
111111111,70
222222222,70
333333333,40
444444444,30
using this code I can... (6 Replies)
Hi All,
Does anyone have any suggestions/examples of how i could show only lines where the first field is not duplicated. If the first field is listed more than once it shouldnt be shown even if the other columns make it unique.
Example file :
876,RIBDA,EC2
876,RIBDH,EX7
877,RIBDF,E28... (4 Replies)
What is an efficient way of counting the number of unique values in a 400 column by 1000 row array and outputting the counts per column, assuming the unique values in the array are:
A, B, C, D
In other words the output should look like: Value COL1 COL2 COL3
A 50 51 52... (16 Replies)
Discussion started by: Geneanalyst
16 Replies
LEARN ABOUT SUNOS
pfexec
pfexec(1) User Commands pfexec(1)NAME
pfexec, pfsh, pfcsh, pfksh - execute a command in a profile
SYNOPSIS
/usr/bin/pfexec command
/usr/bin/pfexec -P privspec command [ arg ...]
/usr/bin/pfsh [ options ] [ argument ...]
/usr/bin/pfcsh [ options ] [ argument ...]
/usr/bin/pfksh [ options ] [ argument ...]
DESCRIPTION
The pfexec program is used to execute commands with the attributes specified by the user's profiles in the exec_attr(4) database. It is
invoked by the profile shells, pfsh, pfcsh, and pfksh which are linked to the Bourne shell, C shell, and Korn shell, respectively.
Profiles are searched in the order specified in the user's entry in the user_attr(4) database. If the same command appears in more than one
profile, the profile shell uses the first matching entry.
The second form, pfexec -P privspec, allows a user to obtain the additional privileges awarded to the user's profiles in prof_attr(4). The
privileges specification on the commands line is parsed using priv_str_to_set(3C). The resulting privileges are intersected with the union
of the privileges specified using the "privs" keyword in prof_attr(4) for all the user's profiles and added to the inheritable set before
executing the command.
USAGE
pfexec is used to execute commands with predefined process attributes, such as specific user or group IDs.
Refer to the sh(1), csh(1), and ksh(1) man pages for complete usage descriptions of the profile shells.
EXAMPLES
Example 1: Obtaining additional user privileges
example% pfexec -P all chown user file
This command runs chown user file with all privileges assigned to the current user, not necessarily all privileges.
EXIT STATUS
The following exit values are returned:
0 Successful completion.
1 An error occurred.
ATTRIBUTES
See attributes(5) for descriptions of the following attributes:
+-----------------------------+-----------------------------+
| ATTRIBUTE TYPE | ATTRIBUTE VALUE |
+-----------------------------+-----------------------------+
|Availability |SUNWcsu |
+-----------------------------+-----------------------------+
SEE ALSO csh(1), ksh(1), profiles(1), sh(1), exec_attr(4), prof_attr(4), user_attr(4), attributes(5)SunOS 5.10 3 Mar 2003 pfexec(1)