Sponsored Content
Full Discussion: Join multiple files
Top Forums Shell Programming and Scripting Join multiple files Post 302893223 by summer_cherry on Tuesday 18th of March 2014 04:11:08 AM
Old 03-18-2014
you may try below python

Code:
import os
import collections
d=collections.defaultdict(list)
cnt=0
for f in sorted(os.listdir('dir')): 
 with open('dir/'+f) as file:
  for line in file:
   t=line.split(" ")
   if t[0] not in d and cnt==1:
    d[t[0]]=['NA']*cnt    
   d[t[0]].append(t[1]) 
 cnt+=1

for i in sorted(d):
 print(i," ".join(map(lambda x: x.replace("\n",""), d[i])),end=" ")
 if len(d[i])<cnt:
  for i in range(cnt-len(d[i])):
   print('NA',end="")
 print("")

 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

shell script to join multiple files

I am a new to Linux and try to write a script to join three multiple files. For example, there are three files file1 # comment a Kevin b Vin c Sam file 2 # comment a 10 b 20 c 40 file 3 # comment a blue b yellow (7 Replies)
Discussion started by: bonosungho
7 Replies

2. UNIX for Dummies Questions & Answers

Join multiple Split files in Unix

Hi, I have a big file of 50GB size. I need copy it to a second ftp from a ftp. I am not able to do the full 50GB transfer as it timesout after some time. SO i am trying to split the file into 5gb each 10 files with the below command. split -b 5368709120 pack.tar.gz backup.gz After I... (2 Replies)
Discussion started by: venu_nbk
2 Replies

3. UNIX for Dummies Questions & Answers

Join 2 files with multiple columns: awk/grep/join?

Hello, My apologies if this has been posted elsewhere, I have had a look at several threads but I am still confused how to use these functions. I have two files, each with 5 columns: File A: (tab-delimited) PDB CHAIN Start End Fragment 1avq A 171 176 awyfan 1avq A 172 177 wyfany 1c7k A 2 7... (3 Replies)
Discussion started by: InfoSeeker
3 Replies

4. Shell Programming and Scripting

How to join multiple files?

I am trying to join a few hundred files using join. Is there a way to use while read or something else to automate this. My problem is the following. Day 1 City Temp ABC 20 DEF 30 HIJ 15 Day 2 City Temp ABC 22 DEF 29 KLM 5 Day 3 (3 Replies)
Discussion started by: theFinn
3 Replies

5. Shell Programming and Scripting

Join multiple files by column with awk

Hi all, I searched through the forum but i can't manage to find a solution. I need to join a set of files placed in a directory (~1600) by column, and obtain an output with first and second column common to each file, but following columns are taken from the file in the list (precisely the fourth... (10 Replies)
Discussion started by: macsx82
10 Replies

6. Shell Programming and Scripting

Awk - join multiple files

Is it possible to join all the files with input1 based on 1st column? input1 a b c d e f input2 a b input3 a e input4 c (2 Replies)
Discussion started by: quincyjones
2 Replies

7. UNIX for Dummies Questions & Answers

How to use the the join command to join multiple files by a common column

Hi, I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column). I want to write a script to join the files by the first common column so that in the... (5 Replies)
Discussion started by: evelibertine
5 Replies

8. Shell Programming and Scripting

Join multiple files with filename

Please help, I want to join multiple files based on column 1, and put the missing values as 0. Also the colname in the output should say which file the values came from. FILE1 1 11 2 12 3 13 FILE2 2 22 3 23 4 24 FILE3 1 31 3 33 4 34 FILE1 FILE2 FILE3 1 11 0 31 (1 Reply)
Discussion started by: newbie83
1 Replies

9. Shell Programming and Scripting

Join files on multiple fields

Hello all, I want to join 2 tabbed files on the first 2 fields, and filling the missing values with 0. The 3rd column in each file is constant for the entire file. file1 12658699 ST5 XX2720 0 1 0 1 53039541 ST5 XX2720 1 0 1.5 1 file2 ... (6 Replies)
Discussion started by: sheetalk
6 Replies

10. Shell Programming and Scripting

Join 2nd column of multiple files

Dear All, I have many files formatted like this: file1.txt: 1/2-SBSRNA4 18 A1BG 3 A1BG-AS1 6 A1CF 0 A2LD1 1 A2M 1160 file2.txt 1/2-SBSRNA4 53 A1BG 1 A1BG-AS1 7 A1CF 0 A2LD1 3 A2M 2780 (5 Replies)
Discussion started by: paolo.kunder
5 Replies
PCAP_LOOP(3PCAP)														  PCAP_LOOP(3PCAP)

NAME
pcap_loop, pcap_dispatch - process packets from a live capture or savefile SYNOPSIS
#include <pcap/pcap.h> typedef void (*pcap_handler)(u_char *user, const struct pcap_pkthdr *h, const u_char *bytes); int pcap_loop(pcap_t *p, int cnt, pcap_handler callback, u_char *user); int pcap_dispatch(pcap_t *p, int cnt, pcap_handler callback, u_char *user); DESCRIPTION
pcap_loop() processes packets from a live capture or ``savefile'' until cnt packets are processed, the end of the ``savefile'' is reached when reading from a ``savefile'', pcap_breakloop() is called, or an error occurs. It does not return when live read timeouts occur. A value of -1 or 0 for cnt is equivalent to infinity, so that packets are processed until another ending condition occurs. pcap_dispatch() processes packets from a live capture or ``savefile'' until cnt packets are processed, the end of the current bufferful of packets is reached when doing a live capture, the end of the ``savefile'' is reached when reading from a ``savefile'', pcap_breakloop() is called, or an error occurs. Thus, when doing a live capture, cnt is the maximum number of packets to process before returning, but is not a minimum number; when reading a live capture, only one bufferful of packets is read at a time, so fewer than cnt packets may be processed. A value of -1 or 0 for cnt causes all the packets received in one buffer to be processed when reading a live capture, and causes all the packets in the file to be processed when reading a ``savefile''. (In older versions of libpcap, the behavior when cnt was 0 was undefined; different platforms and devices behaved differently, so code that must work with older versions of libpcap should use -1, nor 0, as the value of cnt.) callback specifies a pcap_handler routine to be called with three arguments: a u_char pointer which is passed in the user argument to pcap_loop() or pcap_dispatch(), a const struct pcap_pkthdr pointer pointing to the packet time stamp and lengths, and a const u_char pointer to the first caplen (as given in the struct pcap_pkthdr a pointer to which is passed to the callback routine) bytes of data from the packet. The struct pcap_pkthdr and the packet data are not to be freed by the callback routine, and are not guaranteed to be valid after the callback routine returns; if the code needs them to be valid after the callback, it must make a copy of them. RETURN VALUE
pcap_loop() returns 0 if cnt is exhausted, -1 if an error occurs, or -2 if the loop terminated due to a call to pcap_breakloop() before any packets were processed. It does not return when live read timeouts occur; instead, it attempts to read more packets. pcap_dispatch() returns the number of packets processed on success; this can be 0 if no packets were read from a live capture (if, for example, they were discarded because they didn't pass the packet filter, or if, on platforms that support a read timeout that starts before any packets arrive, the timeout expires before any packets arrive, or if the file descriptor for the capture device is in non-blocking mode and no packets were available to be read) or if no more packets are available in a ``savefile.'' It returns -1 if an error occurs or -2 if the loop terminated due to a call to pcap_breakloop() before any packets were processed. If your application uses pcap_breakloop(), make sure that you explicitly check for -1 and -2, rather than just checking for a return value < 0. If -1 is returned, pcap_geterr() or pcap_perror() may be called with p as an argument to fetch or display the error text. SEE ALSO
pcap(3PCAP), pcap_geterr(3PCAP), pcap_breakloop(3PCAP) 24 December 2008 PCAP_LOOP(3PCAP)
All times are GMT -4. The time now is 02:17 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy