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Top Forums Shell Programming and Scripting Print sequences from file2 based on match to, AND in same order as, file1 Post 302891944 by pathunkathunk on Sunday 9th of March 2014 11:53:00 PM
Old 03-10-2014
Thank you for taking time on this. I actually would like the following output, so that the output sequences are in the same order as file1 (sorry, might have been confusing to also post the undesired outcome):
Code:
>EN_comp12952_c0_seq3:367-1668
MDKRLLNVSLLGLAFMFVFTAFQTMGNIEKTILKSIQNDYPSFTGDGYTSL
>ES_comp17168_c1_seq6:1-864
IFELTVVVSFAGSRLAMFIGACCYTMFLVSFLWPTTFLLYFMSAVIGFGASVIWT
>EN_comp13395_c3_seq14:231-1088
KMTSPTSSVIRAAVLQLSVSTDKSANIAIAVKRIQQAKSNGCTLAVLPECFTTPY
>ES_comp17836_c2_seq2:2-862
RKMTSPTSSVIRAAVLQLSVSTDKSTNIAIAVKRIQQAKSNGCTLAVLPECFTTPY

 

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RAKE(1) 						 Ruby Programmers Reference Guide						   RAKE(1)

NAME
rake -- Ruby Make SYNOPSIS
rake [--f Rakefile] [--version] [-CGNPgnqstv] [-D [PATTERN]] [-E CODE] [-I LIBDIR] [-R RAKELIBDIR] [-T [PATTERN]] [-e CODE] [-p CODE] [-r MODULE] [--rules] [variable=value] target ... DESCRIPTION
Rake is a simple ruby(1) build program with capabilities similar to the regular make(1) command. Rake has the following features: o Rakefiles (Rake's version of Makefiles) are completely defined in standard Ruby syntax. No XML files to edit. No quirky Makefile syntax to worry about (is that a tab or a space?). o Users can specify tasks with prerequisites. o Rake supports rule patterns to synthesize implicit tasks. o Flexible FileLists that act like arrays but know about manipulating file names and paths. o A library of prepackaged tasks to make building rakefiles easier. OPTIONS
--version Display the program version. -C --classic-namespace Put Task and FileTask in the top level namespace -D [PATTERN] --describe [PATTERN] Describe the tasks (matching optional PATTERN), then exit. -E CODE --execute-continue CODE Execute some Ruby code, then continue with normal task processing. -G --no-system --nosystem Use standard project Rakefile search paths, ignore system wide rakefiles. -I LIBDIR --libdir LIBDIR Include LIBDIR in the search path for required modules. -N --no-search --nosearch Do not search parent directories for the Rakefile. -P --prereqs Display the tasks and dependencies, then exit. -R RAKELIBDIR --rakelib RAKELIBDIR --rakelibdir RAKELIBDIR Auto-import any .rake files in RAKELIBDIR. (default is rakelib ) -T [PATTERN] --tasks [PATTERN] Display the tasks (matching optional PATTERN) with descriptions, then exit. -e CODE --execute CODE Execute some Ruby code and exit. -f FILE --rakefile FILE Use FILE as the rakefile. -h --help Prints a summary of options. -g --system Using system wide (global) rakefiles (usually ~/.rake/*.rake ). -n --dry-run Do a dry run without executing actions. -p CODE --execute-print CODE Execute some Ruby code, print the result, then exit. -q --quiet Do not log messages to standard output. -r MODULE --require MODULE Require MODULE before executing rakefile. -s --silent Like --quiet, but also suppresses the 'in directory' announcement. -t --trace Turn on invoke/execute tracing, enable full backtrace. -v --verbose Log message to standard output (default). --rules Trace the rules resolution. SEE ALSO
ruby(1) make(1) http://rake.rubyforge.org/ REPORTING BUGS
Bugs, features requests and other issues can be logged at <http://onestepback.org/redmine/projects/show/rake>. You will need an account to before you can post issues. Register at <http://onestepback.org/redmine/account/register>. Or you can send an email to the author. AUTHOR
Rake is written by Jim Weirich <jim@weirichhouse.org> UNIX
November 7, 2012 UNIX
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