Script for linking files with paths in 2 text files
I have 2 txt files, 1.txt and 2.txt which contain the paths to files that need to be linked.
Example 1.txt:
Example 2.txt:
Each line represents images from one subject, so i need to make a link to image4.nii.gz called image5_done.nii.gz (same name as image5, but with _done at the end). Links should be made in the same directory for each subject. I'm very new to scripting and this is something I've been unsuccessfully struggling with for a while. Help is much appreciated.
Last edited by Scrutinizer; 03-06-2014 at 08:42 AM..
Reason: code tags
Hi mates,
I am trying to copile and link to C programs with command:
cc file1,file2
but i raises the error "file not found" ... am i doing the right way?
any suggestion will be appreciated.
thanks
abdul (4 Replies)
hi,
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Hello,
Can anyone tell me how I can make a file link or shortcut in UNIX 4.0, several
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Examples: file -> file
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Dear friends,
First off all , let me apologize for my inexperience. I am just starting use of Linux and gcc .
Actually I ve some .c files in the present directory , and now I am
giving
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All the c files are in present directory.... (2 Replies)
hi guys
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cheers (2 Replies)
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Hi ,
I am a newbie!!!
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Hi All,
I have a 2 path, one with oldfile path in which has several sub folders,each sub folders contains a config file(basically text file), likewise there will be another newfile path which will have sub folders, each sub folders contains a config file.
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Basically my problem is that when I try to compile anything using ./configure && make, it fails because of linker errors. I can reproduce the behavior I'm getting as follows:
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#include <stdio.h>
extern void func(void);
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Discussion started by: MarshallBanana
5 Replies
LEARN ABOUT DEBIAN
warptensorimagemultitransform
WARPTENSORIMAGEMULTITRANSFORM(1) User Commands WARPTENSORIMAGEMULTITRANSFORM(1)NAME
WarpTensorImageMultiTransform - part of ANTS registration suite
DESCRIPTION
WarpImageMultiTransform ImageDimension moving_image output_image [-R reference_image | --tightest-bounding-box] (--reslice-by-header)
[--use-NN (use Nearest Neighbor Interpolator)][--ANTS-prefix prefix-name | --ANTS-prefix-invert prefix-name] {[deformation_field | [-i]
affine_transform_txt | --Id | [-i] --moving-image-header / -mh | [-i] --reference-image-header / -rh]} Example: Reslice the image: WarpIm-
ageMultiTransform 3 Imov.nii Iout.nii --tightest-bounding-box --reslice-by-header Reslice the image to a reference image: WarpImageMulti-
Transform 3 Imov.nii Iout.nii -R Iref.nii --tightest-bounding-box --reslice-by-header Note: -i will use the inversion of the following
affine transform. --tightest-bounding-box will be overrided by -R reference_image if given. It computes the tightest bounding box using
all the affine transformations. --Id uses the identity transform. --moving-image-header or -mh in short will use the orientation header
of the moving image file. This is typically not used with --reslice-by-header.--reference-image-header or -rh in short will use the ori-
entation header of the fixed image file. This is typically not used with --reslice-by-header.--reslice-by-header uses the orientation
matrix and origin encoded in the image file header. It can be used together with -R. This is typically not used together with any other
transforms. --reslice-by-header is equvalient to -i -mh, or -fh -i -mh if used together with -R.
For ANTS users: To use with the deformation field and the affine transform files generated from ANTS: --ANTS-prefix prefix-name --ANTS-pre-
fix-invert prefix-name Example: 3 moving_image output_image -R reference_image --ANTS-prefix abcd.nii.gz Applies abcdWarpxvec.nii.gz/abcd-
Warpyvec.nii.gz/abcdWarpzvec.nii.gz and then abcdAffine.txt. Use this with ANTS to get the moving_image warped into the reference_image
domain. 3 reference_image output_image -R moving_image --ANTS-prefix-invert abcd.nii.gz --ANTS-invert Applies the inversion of
abcdAffine.txt and then abcdInverseWarpxvec.nii.gz/abcdInverseWarpyvec.nii.gz/abcdInverseWarpzvec.nii.gz. Use this with ANTS to get the
reference_image warped into the moving_image domain. Note: prefix name "abcd" without any extension will use ".nii.gz" by default
WarpTensorImageMultiTransform 1.9 May 2012 WARPTENSORIMAGEMULTITRANSFORM(1)