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Shell Programming and Scripting
How to extract specific data?
Post 302891222 by RudiC on Tuesday 4th of March 2014 12:47:29 PM
03-04-2014
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Hi,
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My input:
>seq_1
DSASSTRRARRRRTPRTPSLRSRRSDVTCS
>seq_3
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My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
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Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
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Input:
HS04636 PROGRAM source 836 7001 + ID=g1
HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1
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LEARN ABOUT XFREE86
dh_missing
DH_MISSING(1) Debhelper DH_MISSING(1) NAME dh_missing - check for missing files SYNOPSIS dh_missing [-Xitem] [--sourcedir=dir] [debhelperoptions] DESCRIPTION dh_missing compares the list of installed files with the files in the source directory. If any of the files (and symlinks) in the source directory were not installed to somewhere, it will warn on stderr about that (--list-missing) or fail (--fail-missing). Please note that without either of these options, dh_missing will silently do nothing. This may be useful if you have a large package and want to make sure that you don't miss installing newly added files in new upstream releases. Remember to test different kinds of builds (dpkg-buildpackage -A/-B/...) as you may experience varying results when only a subset of the packages are built. FILES debian/not-installed List the files that are deliberately not installed in any binary package. Paths listed in this file are ignored by dh_missing. However, it is not a method to exclude files from being installed by any of the debhelper tool. If you want a tool to not install a given file, please use its --exclude option (where available). dh_missing will expand wildcards in this file (since debhelper 11.1). Wildcards without matches will be ignored. OPTIONS --list-missing Warn on stderr about source files not installed to somewhere. Note that files that are excluded from being moved via the -X option are not warned about. This is the default in compat 12 and later. --fail-missing This option is like --list-missing, except if a file was missed, it will not only list the missing files, but also fail with a nonzero exit code. SEE ALSO debhelper(7) This program is a part of debhelper. AUTHOR Michael Stapelberg <stapelberg@debian.org> 11.1.6ubuntu2 2018-05-10 DH_MISSING(1)