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Full Discussion: Wildcard in bash script
Top Forums Shell Programming and Scripting Wildcard in bash script Post 302890852 by jahndavik on Saturday 1st of March 2014 04:26:30 AM
Old 03-01-2014
Wildcard in bash script
Hi there,
I am pretty new to linux scripting so ..

I am writing a script to loop through all my directories of sequence files in order to do stuff with them (trimming, normalizing, stuff that one would do with sequence files).

Here I need to pick out files that match each other. The files containing
R1??????R1 should be matched with R1??????R2, R2??????R1 with R2??????R2, and so on. The ‘?’ being wildcards. There are always six of them (barcodes).

So, I try the following test to pick a file:


Code:
if echo "$z" | grep -q "R1??????R1";



which does not work, most likely because the ? are treated as the text part I am searching for and not a wildcard.


Suggestion to solve this one would be greatly appreciated.


best regards
Last edited by Scrutinizer; 03-01-2014 at 06:09 AM.. Reason: code tags
 

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LEARN ABOUT OSF1

uudemon

uudemon(4)						     Kernel Interfaces Manual							uudemon(4)

NAME

       uudemon.admin,  uudemon.cleanu,	uudemon.hour,  uudemon.poll  -	Administrative shell scripts for polling remote systems, cleaning up spool
       directories, reporting status to the system administrator, and routine invocations of the uuxqt and uusched daemons

SYNOPSIS

       These shell scripts reside in the following directory:
	  /usr/lib/uucp

DESCRIPTION

       All the scripts can be run from the command line or can be run automatically by the cron daemon. To automatically run the  scripts,  remove
       the comment character (#) from the beginning of the relevant line in the /var/spool/cron/crontabs/uucp file.

       This  script  reports  status  to  the system administrator. It issues the uustat command to find out the status of uucp jobs. It mails the
       results to the uucp login ID. The script may be modified to send mail to any login ID such as the uucp administrative login ID  (uucpa)	or
       root.  This script cleans up the /var/spool/uucp and /var/spool/uucppublic directories by running the uucleanup command. The uucleanup com-
       mand is run with the following parameters: -C7, -D7, X2, -o2, -W1.  This script runs the uusched and uuxqt daemons in the background.  This
       script  polls  the  systems  listed  in	the  /usr/lib/uucp/Poll file.  The uudemon.poll script should be scheduled before the uudemon.hour
       script. This allows uudemon.poll to create any command files before cron runs the uudemon.hour script.

FILES

       Contains the uudemon.admin, uudemon.cleanu, uudemon.hour and uudemon.poll files.  Contains the uucp file.

RELATED INFORMATION

       Commands: cron(8), uucleanup(8), uusched(8), uuxqt(1)

       Files: /usr/lib/uucp delim off

																	uudemon(4)
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