Identify the overlapping and non overlapping regions
I have 2 input files file1 and file2 each containing 5 columns. The first column contains the chromosomes (range from 1-19,X of which only chr1 and chr2 were shown in example).
what i want to do is
condition1 if chr pos1 and pos2 in both files overlap
then i want to compare the pos3 and pos4. if they (pos3 and pos4) overlap i want to output them to output_1file
and
if they (pos3 and pos4) wont overlap then output to output_2 file.
so if we compare file 1 with file2
my definition of overlap
The positions need not be exactly same. They should contain common region atleast by 1bp(base pair).
Hi,
I am a newbie in unix programming so maybe this is a simple question.
I would like to know how can I make a script that outputs only the values that are not between any given start and end positions
Example
file1:
2 30
40 80
82 100
file2:
ID1 1
ID2 35
ID3 80
ID4 81
ID6 160... (1 Reply)
Hi,
I want to match and print columns that match.
So my file looks like this:
h1 20 30 h1 25 27
h2 50 70 h2 90 95
h2 60 80 h2 70 75
h3 130 150 h3 177 190
h4 140 190 h4 300 305
So there are 6 columns. Column 1 and 4 are names. I am able to get the... (2 Replies)
Hi Everyone!
I was wondering if there's an easy way to have terminals (gnome-terminal for instance) be open in such a way that they're not overlapping each other?
I suppose I could play around with the --geometry option but that would imply me checking whether a terminal is already at a given... (3 Replies)
I am making a game, but I can't figure out how to put one image over the other. The background of the front image, covers up the picturebox under it.
For example, I have two fish images, but when one is in front of the other, its background covers up the other fish.
I attached a picture as an... (1 Reply)
hey guys,
i'm having trouble with a real time multi threaded program that uses lots of shared memory on solaris 8. it sometime crashes out of the blue, a randomness that suggests some sort of memory leak or shared memory overlap.
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I have a rather lengthy list of banned IP ranges in iptables. Initially it was constructed as a rather ad-hoc affair, then later I discovered a site which had IP Block By Country lists, and imported several into iptables.
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Dear Gurus,
I have 57 tab-delimited different text files, each one containing entries in 3 columns. The first column in each file contains names of objects. Some names are present in more than one file. I would like to find those names and store them in a separate text file, preferably with a... (6 Replies)
I have 2 files; file 1 having smaller positions that overlap with the positions with positions in file2.
file1
aaa 20 22 apple
aaa 18 25 banana
aaa 12 30 grapes
aaa 22 25 melon
file2
aaa 18 26 cdded
aaa 10 35 abcde
I want to get something like this
output
aaa 18 26 cdded banana... (4 Replies)