If I understand your requirements correctly, you could try something like:
If you want to run this on a Solaris/SunOS system use /usr/xpg4/bin/awk, /usr/xpg6/bin/awk, or nawk instead of the default /usr/bin/awk.
Your description and sample data didn't indicate what should happen if there is only one line for a given field 1 value. This script will print those lines because there is no other line with that field 1 value that has a value in field 2 that is within 50 points of it. For example, with the input file:
the output produced is:
Hi,
I am new to unix and I need help in solving below mentioned issue, really appreciate ur help.
I have a file
sam, john, 2324, 07142007
tom, thomson, 2343, 07142007
john, scott, 2478, 07142007
its a comma delimited file, I need to extract the last column from each line and this... (4 Replies)
Hi All,
I have two files
file1:
abc,def,ghi,5,jkl,mno
pqr,stu,ghi,10,vwx,xyz
cba,ust,ihg,4,cdu,oqw
file2:
ravi,def,kishore
ramu,ust,krishna
joseph,stu,mike
I need two output files as follows
In my above example, each row in file1 has 6 fields and each row in file2 has 3... (1 Reply)
Hi All,
I have two files
file1:
abc,def,ghi,5,jkl,mno
pqr,stu,ghi,10,vwx,xyz
cba,ust,ihg,4,cdu,oqw
file2:
ravi,def,kishore
ramu,ust,krishna
joseph,stu,mike
I need two output files as follows
In my above example, each row in file1 has 6 fields and each row in file2 has 3... (1 Reply)
Hi All,
I have two files
file1:
abc,def,ghi,5,jkl,mno
pqr,stu,ghi,10,vwx,xyz
cba,ust,ihg,4,cdu,oqw
file2:
ravi,def,kishore
ramu,ust,krishna
joseph,stu,mike
I need two output files as follows
In my above example, each row in file1 has 6 fields and each row in file2 has 3... (3 Replies)
I would like to compare the values of 2nd column of consecutive lines of same file in such a way so that if the difference between first value and second value is more than 100 it should print complete line else ignore line.
Input File
==========
PDB 2500
RTDB 123
RTDB-EAGLE 122
VSCCP 2565... (4 Replies)
Hi all !
If there is only one single value in a column (e.g. column 1 below), then return this value in the same output column.
If there are several values in the same column (e.g. column 2 below), then return the different values separated by "," in the output.
pipe-separated input:
... (11 Replies)
Hi,
I know that this topic has been discussed in the past and I've tried to follow all the guidelines. Anyhow, I following describe my problem.
I have a file (file1 , no. records = 67) containing pairs of IP addresses as follows (with single space as delimiter between the fields):
example... (5 Replies)
Input File:-
COLUMN1 COLUMN2 COLUMN3 COLUMN4 COLUMN5 COLUMN6 SMS Email AO Mail Post N Cell
VEGE Potato E W 396 12 0 384 0 0 0 0 0
VEGE Onion S W 17 0 17 0 0 0 0 0 0
FRUIT APPLE N W 549 61 0 0 0 0 0 488 0
FRUIT APPLE SE W 291 14 239 38 0 10 0 0 0
FRUIT APPLE EAMS W 397 32 309 56 309 309 0... (27 Replies)
I would like to compare values in column 8, and grep the ones where the different is > 1, columns 1 and 2 are the key for array.
Every 4 rows the records values in columns 1 and 2 changed. Then, the comparison in the column 8 need to be done for the 4 rows everytime columns 1 and 2 changed
... (4 Replies)
Discussion started by: jiam912
4 Replies
LEARN ABOUT DEBIAN
pc-compare
PC-COMPARE(1) Probcons Manual PC-COMPARE(1)NAME
pc-compare - Program for scoring alignments according to a reference alignment with respect to sum-of-pairs and column scores.
SYNOPSIS
pc-compare [TEST_ALIGNMENT] [REFERENCE_ALIGNMENT] [BALIBASE_ANNOT_FILE] [-col] [-core] [-caps] [-annot FILENAME]
NOTE
pc-compare is named compare in the original sources, but has been remamed to avoid collision with other program names.
SEE ALSO pc-makegnufile(1), pc-project(1),from the probcons-extra package, and probcons(1) and probcons-RNA(1) from the probcons package.
REFERENCE
Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence
Alignment. Genome Research 15: 330-340.
AUTHORS
Chuong Do <chuongdo@cs.stanford.edu>
Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science,
Stanford University.
Charles Plessy <charles-debian-nospam@plessy.org>
Wrote this manpage in DocBook XML for the Debian distribution.
COPYRIGHT
This program and its manpage are in the public domain.
pc-compare 1.12 2007-04-04 PC-COMPARE(1)