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Top Forums UNIX for Dummies Questions & Answers [Solved] Matching and transposing Post 302887578 by zajtat on Sunday 9th of February 2014 03:38:01 AM
Old 02-09-2014
[Solved] Matching and transposing

Hi,

I've got two files.

files one:

HTML Code:
AAMP	2:219129783:A:G	
 AAMP	2:219129896:A:G	
 AAMP	2:219130802:T:C	
 AANAT	17:74464865:T:G	
 AANAT	17:74464914:A:G	
 AANAT	17:74464920:T:C

file 2:
HTML Code:
AAMP
AANAT
I need to create the following file:

HTML Code:
AAMP	2:219129783:A:G  2:219129896:A:G  2:219130802:T:C	
 AANAT	17:74464865:T:G	 17:74464914:A:G 17:74464920:T:C
[

Basically, the first column of file one is matched to first column of file two and all the lines of file one matching column one in file 2 are then transposed and printed in one line, next to the first column of file two.

I am afraid my awk knowledge is not enough to solve this one.
If anyone can offer a solution, I would very very grateful!!!!

Many thanks for your time and help in advance!
 

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HTML::FormatText(3)					User Contributed Perl Documentation				       HTML::FormatText(3)

NAME
HTML::FormatText - Format HTML as plaintext VERSION
version 2.11 SYNOPSIS
use HTML::TreeBuilder; $tree = HTML::TreeBuilder->new->parse_file("test.html"); use HTML::FormatText; $formatter = HTML::FormatText->new(leftmargin => 0, rightmargin => 50); print $formatter->format($tree); or, more simply: use HTML::FormatText; my $string = HTML::FormatText->format_file( 'test.html', leftmargin => 0, rightmargin => 50 ); DESCRIPTION
HTML::FormatText is a formatter that outputs plain latin1 text. All character attributes (bold/italic/underline) are ignored. Formatting of HTML tables and forms is not implemented. HTML::FormatText is built on HTML::Formatter and documentation for that module applies to this - especially "new" in HTML::Formatter, "format_file" in HTML::Formatter and "format_string" in HTML::Formatter. You might specify the following parameters when constructing the formatter: leftmargin (alias lm) The column of the left margin. The default is 3. rightmargin (alias rm) The column of the right margin. The default is 72. SEE ALSO
HTML::Formatter INSTALLATION
See perlmodinstall for information and options on installing Perl modules. BUGS AND LIMITATIONS
You can make new bug reports, and view existing ones, through the web interface at <http://rt.cpan.org/Public/Dist/Display.html?Name=HTML-Format>. AVAILABILITY
The project homepage is <https://metacpan.org/release/HTML-Format>. The latest version of this module is available from the Comprehensive Perl Archive Network (CPAN). Visit <http://www.perl.com/CPAN/> to find a CPAN site near you, or see <https://metacpan.org/module/HTML::Format/>. AUTHORS
o Nigel Metheringham <nigelm@cpan.org> o Sean M Burke <sburke@cpan.org> o Gisle Aas <gisle@ActiveState.com> COPYRIGHT AND LICENSE
This software is copyright (c) 2013 by Nigel Metheringham, 2002-2005 Sean M Burke, 1999-2002 Gisle Aas. This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself. perl v5.18.2 2017-10-06 HTML::FormatText(3)
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