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Top Forums UNIX for Dummies Questions & Answers [Solved] Matching and transposing Post 302887578 by zajtat on Sunday 9th of February 2014 03:38:01 AM
Old 02-09-2014
[Solved] Matching and transposing

Hi,

I've got two files.

files one:

HTML Code:
AAMP	2:219129783:A:G	
 AAMP	2:219129896:A:G	
 AAMP	2:219130802:T:C	
 AANAT	17:74464865:T:G	
 AANAT	17:74464914:A:G	
 AANAT	17:74464920:T:C

file 2:
HTML Code:
AAMP
AANAT
I need to create the following file:

HTML Code:
AAMP	2:219129783:A:G  2:219129896:A:G  2:219130802:T:C	
 AANAT	17:74464865:T:G	 17:74464914:A:G 17:74464920:T:C
[

Basically, the first column of file one is matched to first column of file two and all the lines of file one matching column one in file 2 are then transposed and printed in one line, next to the first column of file two.

I am afraid my awk knowledge is not enough to solve this one.
If anyone can offer a solution, I would very very grateful!!!!

Many thanks for your time and help in advance!
 

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HTML::TreeBuilder::LibXML(3pm)				User Contributed Perl Documentation			    HTML::TreeBuilder::LibXML(3pm)

NAME
HTML::TreeBuilder::LibXML - HTML::TreeBuilder and XPath compatible interface with libxml SYNOPSIS
use HTML::TreeBuilder::LibXML; my $tree = HTML::TreeBuilder::LibXML->new; $tree->parse($html); $tree->eof; # $tree and $node compatible to HTML::Element my @nodes = $tree->findvalue($xpath); for my $node (@nodes) { print $node->tag; my %attr = $node->all_external_attr; } HTML::TreeBuilder::LibXML->replace_original(); # replace HTML::TreeBuilder::XPath->new DESCRIPTION
HTML::TreeBuilder::XPath is libxml based compatible interface to HTML::TreeBuilder, which could be slow for a large document. HTML::TreeBuilder::LibXML is drop-in-replacement for HTML::TreeBuilder::XPath. This module doesn't implement all of HTML::TreeBuilder and HTML::Element APIs, but enough methods are defined so modules like Web::Scraper work. BENCHMARK
This is a benchmark result by tools/benchmark.pl Web::Scraper: 0.26 HTML::TreeBuilder::XPath: 0.09 HTML::TreeBuilder::LibXML: 0.01_01 Rate no_libxml use_libxml no_libxml 5.45/s -- -94% use_libxml 94.3/s 1632% -- AUTHOR
Tokuhiro Matsuno <tokuhirom slkjfd gmail.com> Tatsuhiko Miyagawa <miyagawa@cpan.org> Masahiro Chiba THANKS TO
woremacx++ http://d.hatena.ne.jp/woremacx/20080202/1201927162 id:dailyflower SEE ALSO
HTML::TreeBuilder, HTML::TreeBuilder::XPath LICENSE
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.14.2 2012-04-02 HTML::TreeBuilder::LibXML(3pm)
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