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Full Discussion: Grep command
Top Forums Shell Programming and Scripting Grep command Post 302885831 by sea on Tuesday 28th of January 2014 01:51:07 PM
Old 01-28-2014
So whats the content of hg19_refGene.txt - the file within grep is looking for a string "panel_genes.txt".
Also, you're uploading a 'result file' (match.txt) that is alot larger than what you call an input file (panel_genes.txt).

Also, even if i misunderstand the grep command, the result would overwrite the 'more-detailed-looking' match.txt file with a 'row of single strings' compared to its current content.

Phew, translating is hard at times.
 

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IGAWK(1)							 Utility Commands							  IGAWK(1)

NAME
igawk - gawk with include files SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ... igawk [ all gawk options ] [ -- ] program-text file ... DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1). AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like @include getopt.awk in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path. OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports. EXAMPLES
cat << EOF > test.awk @include getopt.awk BEGIN { while (getopt(ARGC, ARGV, "am:q") != -1) ... } EOF igawk -f test.awk SEE ALSO
gawk(1) Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995. AUTHOR
Arnold Robbins (arnold@skeeve.com). Free Software Foundation Nov 3 1999 IGAWK(1)
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