Here there are four tab-separated columns. The first column is the used algorithm for prediction, and there are 4 of them A-D. The second column are the predicted targets (which actually are genes), x and y. The third and fourth column indicate the start and the end of the predicted site in the sequence of the genes.
I'd need to unique the entries in column 2, based on the common range in the columns 3 and 4, something like this:
Here, for example, at the first line we have algorithms A, B and C which predict the gene x, and the predicted positions all fall into the same site, i.e. the position 70-80 for algorithm B and 75-85 for algorithm C are both located inside the same predicted position by algorithm A, which is 65-85; and the last column indicates how many algorithms predicted this position. On the contrary, the predicted site by algorithm D for the entry x does not coincide with the others, so is presented in a separate line. The results for the entry y are explained in the same way.
Hope this is clear.
Thank you in advanced
Last edited by flyfisherman; 01-25-2014 at 02:42 PM..
Howdy experts,
We have some ranges of number which belongs to particual group as below.
GroupNo StartRange EndRange
Group0125 935300 935399
Group2006 935400 935476
937430 937459
Group0324 935477 935549
... (6 Replies)
Hi,
I am going to fetch a list of numbers that starts with "0032" from a file with a format like the given below:
"
0032459999 0032458888 0032457777
0032451111 0032452222 0032453333
0032459999 0032458888 0032457777
0032451111 0032452222 0032453333
"
I want to get a unique... (6 Replies)
Hi, I have a small piece of awk code (see below) that generates random numbers.
gawk -F"," 'BEGIN { srand(); for (i = 1; i <= 30; i++) printf("%s AM329_%04d\n",$0,int(36 * rand())+1) }' OFS=, AM329_hole_names.csv
The code works fine and generates alphanumeric numbers like AM329_0001,... (2 Replies)
I am trying to extract specific information from a large *.sam file (it's originally 28Gb).
I want to extract all lines that are on chr3 somewhere in the range of 112,937,439-113,437,438.
Here is a sample line from my file so you can get a feel for what each line looks like:
seq.4 0 ... (8 Replies)
I want to create entries based on the series as in examples below:
Input:
2dat3 grht-5&&-15
3dat3 grht-16&&-30
4dat3 ftht-4&&-12
5sat3 ftht-16&&-20
Output:
2dat3 grht-5
2dat3 grht-6
2dat3 grht-7
2dat3 grht-8 (7 Replies)
Hi all,
I wanted to save the values of a file that contains unique entries based on a specific column (column 4). my sample file looks like the following:
input file: 200006-07file.txt
145 35 10 3
147 35 12 4
146 36 11 3
145 34 12 5
143 31 15 4
146 30 14 5
desired output files:... (5 Replies)
I have some files named file1, file2, fille3......etc. These files are in a folder f1. The content of files are shown below. I would like to count the unique pairs of third column in each file. some files have no data. It should be printed as zero. Your help would be appreciated.
file1
ARG... (1 Reply)
Discussion started by: samra
1 Replies
LEARN ABOUT DEBIAN
number::range
Number::Range(3pm) User Contributed Perl Documentation Number::Range(3pm)NAME
Number::Range - Perl extension defining ranges of numbers and testing if a number is found in the range. You can also add and delete from
this range.
SYNOPSIS
use Number::Range;
my $range = Number::Range->new("-10..10,12,100..120");
if ($range->inrange("13")) {
print "In range
";
} else {
print "Not in range
";
}
$range->addrange("200..300");
$range->delrange("250..255");
my $format = $range->range;
# $format will be '-10..10,12,100..120,200..249,256..300'
DESCRIPTION
Number::Range will take a description of a range, and then allow you to test on if a number falls within the range. You can also add and
delete from the range.
RANGE FORMAT
The format used for range is pretty straight forward. To separate sections of ranges it uses a "," or whitespace. To create the range, it
uses ".." to do this, much like Perl's own binary ".." range operator in list context.
METHODS
new
$range = Number::Range->new("10..20","25..30");
Creates the range object. It will accept any number of ranges as its input.
addrange
$range->addrange("22");
This will also take any number of ranges as input and add them to the existing range.
delrange
$range->delrange("10");
This will also take any number of ranges as input and delete them from the existing range.
inrange
$range->inrange("26"); my @results = $range->inrange("27","200");
This will take one or more numbers and check if each of them exists in the range. If passed a list, and in array context, it will
return a list of 0's or 1's, depending if that one was true or false in the list position. If in scalar context, it will return a
single 1 if all are true, or a single 0 if one of them failed.
range
$format = $range->range; @numbers = $range->range;
Depending on context this will return either an array of all the numbers found in the range, for list context. For scalar context it
will return a range string.
size
$size = $range->size;
This will return the total number of entries in the range.
EXPORT
None by default.
SEE ALSO
Number::Tolerant, Tie::RangeHash, and Array::IntSpan for similar modules.
AUTHOR
Larry Shatzer, Jr., <larrysh@cpan.org>
COPYRIGHT AND LICENSE
Copyright (C) 2004-12 by Larry Shatzer, Jr.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.14.2 2012-06-20 Number::Range(3pm)