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Top Forums Shell Programming and Scripting [Solved] awk compare two different columns of two files and print all from both file Post 302884308 by Akshay Hegde on Monday 20th of January 2014 03:08:07 AM
Old 01-20-2014
Quote:
Originally Posted by justinjj
Hi,
I want to compare two columns from file1 with another two column of file2 and print matched and unmatched column like this

File1
1 rs1 abc
3 rs4 xyz
1 rs3 stu

File2
1 kkk rs1 AA 10
1 aaa rs2 DD 20
1 ccc rs3 EE 30
1 nnn rs4 RR 40

OUTPUT should be like this
1 kkk rs1 AA 10 abc
1 aaa rs2 DD 20 NA
1 ccc rs3 EE 30 stu
1 nnn rs4 RR 40 NA

column 1 and 2 from file1 should match with column 1 and 3 of the file2 and print file2 with column 3 of matched file1.
Thanks much.



Try :


Code:
$ awk 'FNR==NR{A[$1 FS $2]=$3;next}{print ($1 FS $3 in A ) ? $0 OFS A[$1 FS $3] : $0 OFS "NA"}' file1 file2

This User Gave Thanks to Akshay Hegde For This Post:
 

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COMM(1) 						    BSD General Commands Manual 						   COMM(1)

NAME
comm -- select or reject lines common to two files SYNOPSIS
comm [-123i] file1 file2 DESCRIPTION
The comm utility reads file1 and file2, which should be sorted lexically, and produces three text columns as output: lines only in file1; lines only in file2; and lines in both files. The filename ``-'' means the standard input. The following options are available: -1 Suppress printing of column 1. -2 Suppress printing of column 2. -3 Suppress printing of column 3. -i Case insensitive comparison of lines. Each column will have a number of tab characters prepended to it equal to the number of lower numbered columns that are being printed. For example, if column number two is being suppressed, lines printed in column number one will not have any tabs preceding them, and lines printed in column number three will have one. The comm utility assumes that the files are lexically sorted; all characters participate in line comparisons. DIAGNOSTICS
The comm utility exits 0 on success, and >0 if an error occurs. SEE ALSO
cmp(1), diff(1), sort(1), uniq(1) STANDARDS
The comm utility conforms to IEEE Std 1003.2-1992 (``POSIX.2''). HISTORY
A comm command appeared in Version 4 AT&T UNIX. BSD
June 6, 1993 BSD
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