I have a script that I need to run on one file at a time. Unfortunately using for i in F* or cat F* is not possible. When I run the script using that, it jumbles the files and they are out of order. Here is the script:
I have a number of files, all F* files that I need to apply it to, but I don't want the order of the files changed.
When I apply it to one file it works great, when I try to do for i in F* or while read file it jumbles the lines out of order.
Example of files:
I have also tried something like this:
But this halts. It seems that there is no way to use the regular for i in F* or anything similar, as it treats the files as a whole rather than working through them one by one
Is there a way to apply this script to one file at a time, pause and then have it go to the next file? For example, for the script to run on one file, then finish that iteration of its run, and go to the next file and then work on it?
Hello
when I try to run rm on multiple files I have problem to delete files with space.
I have this command :
find . -name "*.cmd" | xargs \rm -f
it doing the work fine but when it comes across files with spaces like : "my foo file.cmd"
it refuse to delete it
why? (1 Reply)
Question for anyone that might be able to help:
My objective is to eheck if a file (a source file) exists in a directory. If it does then, I'd like to call an application (Informatica ETL file...not necessary to know) to run a program which extracts data and loads it into multiple targets.
... (6 Replies)
Hi,
I have thousands of files in a directory that have the following 2 formats:
289620178.aln
289620179.aln
289620180.aln
289620183.aln
289620184.aln
289620185.aln
289620186.aln
289620187.aln
289620188.aln
289620189.aln
289620190.aln
289620192.aln....
and:
alnCDS_1.fasta (1 Reply)
I'm trying some thing like this. But not working
It worked for bash files
Now I want some thing like that along with multiple input files by redirecting their outputs as inputs of next command like below
Could you guyz p0lz help me on this
#!/usr/bin/awk -f
BEGIN
{
}
script1a.awk... (2 Replies)
Hi,
I want to run a Perl script on multiple files, with same name ("Data.txt") but in different directories (eg : 2010_06_09_A/Data.txt, 2010_06_09_B/Data.txt).
I know how to run this perl script on files in the same directory like:
for $i in *.txt
do
perl myscript.pl $i > $i.new... (8 Replies)
Hi everyone,
I'm new to the forums, as you can probably tell... I'm also pretty new to scripting and writing any type of code.
I needed to know exactly how I can grep for multiple strings, in files located in one directory, but I need each string to output to a separate file.
So I'd... (19 Replies)
Hi
I have 100 files under file A labled 1.txt 2.txt.....100.txt(made up name)
I have 1 files under file B labled name.txt
How can i run the same perl script on 100 files and file name.txt
I want to run
perl script.pl A/1.txt B/name.txt
perl script.pl A/2.txt B/name.txt
.......
perl... (3 Replies)
How can I run the following command on multiple files and print out the corresponding multiple files.
perl script.pl genome.gff 1.txt > 1.gff
However, there are multiples files of 1.txt, from 1----100.txt
Thank you so much.
No duplicate posting! Continue here. (0 Replies)
How can I Run one script on multiple files and print out multiple files.
FOR EXAMPLE
i want to run script.pl on 100 files named 1.txt ....100.txt under same directory and print out corresponding file 1.gff ....100.gff.THANKS (4 Replies)
Hi Guys,
I've been having a look around to try and understand how i can do the below however havent come across anything that will work.
Basically I have a parser script that I need to run across all files in a certain directory, I can do this one my by one on comand line however I... (1 Reply)
Discussion started by: mutley2202
1 Replies
LEARN ABOUT DEBIAN
gethead
gethead(1) General Commands Manual gethead(1)Name
gethead - Print FITS or IRAF header keyword values
Synopsis
gethead [-hptv] [-d pathname] [-n num] <FITS or IRAF file> kw1 kw2 ... kwn
Description
Print values of the specified keywords from the given image header. By default they are all listed on one line, separated by spaces. The
-v flag causes the keyword names and values to be printed, one keyword per line. To read keywords from a list of files, substitute @<list-
file> for the file names on the command line. To read a lot of keywords, put them, one per line, in a file and substitute @<keylistfile>
on the command line. If two @ commands are present, the program will figure out which contains file names and which contains keywords.
Options-a List file name even if keywords are not found
-d Root directory for input files (default is cwd)
-e Output keyword=value's on one line per file
-f Never print filenames (default is to print them if more than one)
-g Output keyword=value's on one line per keyword
-h flag causes the keyword names to be printed at top of columns.
-n Number of decimal places in numeric output
-o OR conditions instead of ANDing them
-p Print full pathnames of files
-t flag causes the output to be in tab-separated tables with keyword column headings.
-u Always print ___ if keyword not found, event if only one keyword in search
-v Print output as <keyword>=<value>, one per line
Web Page
http://tdc-www.harvard.edu/software/wcstools/gethead.html
Author
Doug Mink, SAO (dmink@cfa.harvard.edu)
6 July 2001 WCSTools gethead(1)