I've got a 2.2 Gig syslog file from our Cisco firewall appliance. The problem is that we've been seeing gaps in the syslog for anywhere from 10 minutes to 2 hours. Currently I've just been using 'less' and paging through the file to see if I can find any noticeable gaps. Obviously this isn't the... (3 Replies)
Hey everyone,
I have come across an issue to where I am trying to create a script which changes the text color with a simple if then statement. I have seen it done with Fedora 8 but when I try and create it using my MacBook Pro running Snow Leopard it doesn't work. Funny thing is, when I use... (2 Replies)
I am very new to shell scripting. We use C-Shell here and I know the issues that surround it. I hope a solution can be created using awk, sed, etc... instead of having to write a program.
I have an input file that is sorted by date and time in ascending order
... (2 Replies)
Hi all,
I make this bash script in which there is one option to add a name in txt file. So when I run the script it ask me for the name. When i enter the name, that name gets added in a txt file. If i add the same name again, the message comes up, the name is already there
My question is..... (2 Replies)
Hello,
I have lots of sequentially numbered files which make up an image sequence.
I'm trying to do two things with it:
#1: Find gaps in the sequence and move each range of sequencial files into their own subfolder.
#2: Designate a starting point (file) and move every 24th file into... (4 Replies)
is this possible?
its kind of like incrementing the value of a number in a variable. but in this case, instead of the value of the variable being a number, it's just contents/strings/characters/alpha-numeric etc. NOT a number.
For instance:
VAR=Tommy
for all in $(blah blah)
do
... (2 Replies)
Hi,
I am new in bash scripting. In my work, I provide support to several users and when I connect to their computers I use the same admin and password, so I am trying to create a script that will only ask me for the IP address and then connect to the computer without having me to type the user... (5 Replies)
Discussion started by: arcoa05
5 Replies
LEARN ABOUT DEBIAN
probalign
PROBALIGN(1) User Commands PROBALIGN(1)NAME
probalign - Align sequences in MFAFILE(s) and print result to standard output
DESCRIPTION
PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the standard output. Written by Satish Chikkagoudar and
Usman Roshan using code from PROBCONS version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein).
PROBALIGN 1.4 comes with ABSOLUTELY NO WARRANTY. This is free software, and you are welcome to redistribute it under certain conditions.
See the README file for details.
Usage:
probalign [OPTION]... [MFAFILE]...
Description:
Align sequences in MFAFILE(s) and print result to standard output
-clustalw
use CLUSTALW output format instead of MFA
-v, --verbose
report progress while aligning (default: off)
-a, --alignment-order
print sequences in alignment order rather than input order (default: off)
-T, -temperature
Sets the thermodynamic temperature parameter
(default: 5 (for protein data mode), 1 ( for nucleotide data mode)).
-score_matrix, --score_matrix
Sets the type of scoring matrix used to calculate the posterior probabilities (default: gonnet_160, representing gonnet 160, refer
README for details)
-go, --gap-open
This option can be used to specify the gap open parameter. The default for Gonnet 160 (protein) is 22 and nucleotide (simple matrix)
is 4.
-ge, --gap-extension
This option can be used to specify the gap extension parameter. The default for Gonnet 160 (protein) is 1 and nucleotide (simple
matrix) is 0.25.
-nuc
Specify this option to indicate that inputted sequences are nucleotide sequences
-prot
Specify this option to indicate that inputted sequences are protein sequences [DEFAULT]
-showPP
Outputs the posterior probabilities of alignment columns as a new sequence named Posterior Probabilities (The probability values are
scaled to be between integers between 0 and 9).
probalign 1.4 May 2011 PROBALIGN(1)