Sponsored Content
Full Discussion: Join multiple files
Top Forums Shell Programming and Scripting Join multiple files Post 302882363 by in2nix4life on Monday 6th of January 2014 11:00:49 AM
Old 01-06-2014
Nice one Akshay.

I made a modification to allow sorting within the awk statement:

Code:
awk '{A[$1]=A[$1] ? A[$1] OFS $2 : $2}END{for(i in A)print i, A[i] | "sort"}' file*
rs0001 100e-34 1.98e-22 81.98e-22
rs0003 2.8e-01 2.8e-01 42.8e-01
rs0004 3.77e-10
rs008 1.9e-90 1.9e-90

This User Gave Thanks to in2nix4life For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

shell script to join multiple files

I am a new to Linux and try to write a script to join three multiple files. For example, there are three files file1 # comment a Kevin b Vin c Sam file 2 # comment a 10 b 20 c 40 file 3 # comment a blue b yellow (7 Replies)
Discussion started by: bonosungho
7 Replies

2. UNIX for Dummies Questions & Answers

Join multiple Split files in Unix

Hi, I have a big file of 50GB size. I need copy it to a second ftp from a ftp. I am not able to do the full 50GB transfer as it timesout after some time. SO i am trying to split the file into 5gb each 10 files with the below command. split -b 5368709120 pack.tar.gz backup.gz After I... (2 Replies)
Discussion started by: venu_nbk
2 Replies

3. UNIX for Dummies Questions & Answers

Join 2 files with multiple columns: awk/grep/join?

Hello, My apologies if this has been posted elsewhere, I have had a look at several threads but I am still confused how to use these functions. I have two files, each with 5 columns: File A: (tab-delimited) PDB CHAIN Start End Fragment 1avq A 171 176 awyfan 1avq A 172 177 wyfany 1c7k A 2 7... (3 Replies)
Discussion started by: InfoSeeker
3 Replies

4. Shell Programming and Scripting

How to join multiple files?

I am trying to join a few hundred files using join. Is there a way to use while read or something else to automate this. My problem is the following. Day 1 City Temp ABC 20 DEF 30 HIJ 15 Day 2 City Temp ABC 22 DEF 29 KLM 5 Day 3 (3 Replies)
Discussion started by: theFinn
3 Replies

5. Shell Programming and Scripting

Join multiple files by column with awk

Hi all, I searched through the forum but i can't manage to find a solution. I need to join a set of files placed in a directory (~1600) by column, and obtain an output with first and second column common to each file, but following columns are taken from the file in the list (precisely the fourth... (10 Replies)
Discussion started by: macsx82
10 Replies

6. Shell Programming and Scripting

Awk - join multiple files

Is it possible to join all the files with input1 based on 1st column? input1 a b c d e f input2 a b input3 a e input4 c (2 Replies)
Discussion started by: quincyjones
2 Replies

7. UNIX for Dummies Questions & Answers

How to use the the join command to join multiple files by a common column

Hi, I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column). I want to write a script to join the files by the first common column so that in the... (5 Replies)
Discussion started by: evelibertine
5 Replies

8. Shell Programming and Scripting

Join multiple files with filename

Please help, I want to join multiple files based on column 1, and put the missing values as 0. Also the colname in the output should say which file the values came from. FILE1 1 11 2 12 3 13 FILE2 2 22 3 23 4 24 FILE3 1 31 3 33 4 34 FILE1 FILE2 FILE3 1 11 0 31 (1 Reply)
Discussion started by: newbie83
1 Replies

9. Shell Programming and Scripting

Join files on multiple fields

Hello all, I want to join 2 tabbed files on the first 2 fields, and filling the missing values with 0. The 3rd column in each file is constant for the entire file. file1 12658699 ST5 XX2720 0 1 0 1 53039541 ST5 XX2720 1 0 1.5 1 file2 ... (6 Replies)
Discussion started by: sheetalk
6 Replies

10. Shell Programming and Scripting

Join 2nd column of multiple files

Dear All, I have many files formatted like this: file1.txt: 1/2-SBSRNA4 18 A1BG 3 A1BG-AS1 6 A1CF 0 A2LD1 1 A2M 1160 file2.txt 1/2-SBSRNA4 53 A1BG 1 A1BG-AS1 7 A1CF 0 A2LD1 3 A2M 2780 (5 Replies)
Discussion started by: paolo.kunder
5 Replies
A2P(1)							 Perl Programmers Reference Guide						    A2P(1)

NAME
a2p - Awk to Perl translator SYNOPSIS
a2p [options] [filename] DESCRIPTION
A2p takes an awk script specified on the command line (or from standard input) and produces a comparable perl script on the standard output. OPTIONS Options include: -D<number> sets debugging flags. -F<character> tells a2p that this awk script is always invoked with this -F switch. -n<fieldlist> specifies the names of the input fields if input does not have to be split into an array. If you were translating an awk script that processes the password file, you might say: a2p -7 -nlogin.password.uid.gid.gcos.shell.home Any delimiter can be used to separate the field names. -<number> causes a2p to assume that input will always have that many fields. -o tells a2p to use old awk behavior. The only current differences are: o Old awk always has a line loop, even if there are no line actions, whereas new awk does not. o In old awk, sprintf is extremely greedy about its arguments. For example, given the statement print sprintf(some_args), extra_args; old awk considers extra_args to be arguments to "sprintf"; new awk considers them arguments to "print". "Considerations" A2p cannot do as good a job translating as a human would, but it usually does pretty well. There are some areas where you may want to examine the perl script produced and tweak it some. Here are some of them, in no particular order. There is an awk idiom of putting int() around a string expression to force numeric interpretation, even though the argument is always integer anyway. This is generally unneeded in perl, but a2p can't tell if the argument is always going to be integer, so it leaves it in. You may wish to remove it. Perl differentiates numeric comparison from string comparison. Awk has one operator for both that decides at run time which comparison to do. A2p does not try to do a complete job of awk emulation at this point. Instead it guesses which one you want. It's almost always right, but it can be spoofed. All such guesses are marked with the comment ""#???"". You should go through and check them. You might want to run at least once with the -w switch to perl, which will warn you if you use == where you should have used eq. Perl does not attempt to emulate the behavior of awk in which nonexistent array elements spring into existence simply by being referenced. If somehow you are relying on this mechanism to create null entries for a subsequent for...in, they won't be there in perl. If a2p makes a split line that assigns to a list of variables that looks like (Fld1, Fld2, Fld3...) you may want to rerun a2p using the -n option mentioned above. This will let you name the fields throughout the script. If it splits to an array instead, the script is probably referring to the number of fields somewhere. The exit statement in awk doesn't necessarily exit; it goes to the END block if there is one. Awk scripts that do contortions within the END block to bypass the block under such circumstances can be simplified by removing the conditional in the END block and just exiting directly from the perl script. Perl has two kinds of array, numerically-indexed and associative. Perl associative arrays are called "hashes". Awk arrays are usually translated to hashes, but if you happen to know that the index is always going to be numeric you could change the {...} to [...]. Iteration over a hash is done using the keys() function, but iteration over an array is NOT. You might need to modify any loop that iterates over such an array. Awk starts by assuming OFMT has the value %.6g. Perl starts by assuming its equivalent, $#, to have the value %.20g. You'll want to set $# explicitly if you use the default value of OFMT. Near the top of the line loop will be the split operation that is implicit in the awk script. There are times when you can move this down past some conditionals that test the entire record so that the split is not done as often. For aesthetic reasons you may wish to change index variables from being 1-based (awk style) to 0-based (Perl style). Be sure to change all operations the variable is involved in to match. Cute comments that say "# Here is a workaround because awk is dumb" are passed through unmodified. Awk scripts are often embedded in a shell script that pipes stuff into and out of awk. Often the shell script wrapper can be incorporated into the perl script, since perl can start up pipes into and out of itself, and can do other things that awk can't do by itself. Scripts that refer to the special variables RSTART and RLENGTH can often be simplified by referring to the variables $`, $& and $', as long as they are within the scope of the pattern match that sets them. The produced perl script may have subroutines defined to deal with awk's semantics regarding getline and print. Since a2p usually picks correctness over efficiency. it is almost always possible to rewrite such code to be more efficient by discarding the semantic sugar. For efficiency, you may wish to remove the keyword from any return statement that is the last statement executed in a subroutine. A2p catches the most common case, but doesn't analyze embedded blocks for subtler cases. ARGV[0] translates to $ARGV0, but ARGV[n] translates to $ARGV[$n-1]. A loop that tries to iterate over ARGV[0] won't find it. ENVIRONMENT
A2p uses no environment variables. AUTHOR
Larry Wall <larry@wall.org> FILES
SEE ALSO
perl The perl compiler/interpreter s2p sed to perl translator DIAGNOSTICS
BUGS
It would be possible to emulate awk's behavior in selecting string versus numeric operations at run time by inspection of the operands, but it would be gross and inefficient. Besides, a2p almost always guesses right. Storage for the awk syntax tree is currently static, and can run out. perl v5.12.5 2012-10-11 A2P(1)
All times are GMT -4. The time now is 07:37 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy