12-21-2013
thank you very much for the solution, and indeed it worked well!
as I said in my previous post, the database is tab delimited. the fact that it is displaying four spaces on-screen is unfortunate as indeed the database is tab delimited.
thank you for noting about the trailing space. in this instance it is not an issue.
Colin
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
I have a problem in grepping a file for 2 strings and writing them to 2 appropriate files. I need to use the awk command and read the file only once and write to the appropriate file.
My file is very huge in size and it is taking a long time using cat command and grep command.
Can anyone... (3 Replies)
Discussion started by: m_subra_mani
3 Replies
2. Shell Programming and Scripting
I have one large file, after every 200 line i have to split the file and the add header and footer to each small file?
It is possible to add different header and footer to each file? (7 Replies)
Discussion started by: ashish4422
7 Replies
3. Shell Programming and Scripting
I need some help with this shell script for class. All it does is organize your files. It works, but in the log file, it needs to show the new filepaths of the moved files. Heres my log of my output:
Starting to organize...
movie2.wmv -->
movie3.mov -->
movie1.mpg -->
song1.mp3 --> ... (3 Replies)
Discussion started by: ryandamartini
3 Replies
4. Shell Programming and Scripting
I have a file test1.html like below:
<dctm_topnav_en_US>
<html>
.....
</html>
<dctm_topnav_en_CA>
<html>
.....
</html>
<dctm_topnav_en_FR>
<html>
.....
</html>
I need to use awk to split this into three file names like en_US.html ,
en_CA.html, en_FR.html each having content between... (4 Replies)
Discussion started by: vijay52
4 Replies
5. Shell Programming and Scripting
Input file: i have a file and need to split into multiple files based on first column. i need the header for all the splitted files. I'm unable to get the header.
$ cat log.txt
id,mailtype,value
1252468812,yahoo,3.5
1252468812,hotmail,2.4
1252468819,yahoo,1.2
1252468812,msn,8.9... (6 Replies)
Discussion started by: mannefromdetroi
6 Replies
6. UNIX for Dummies Questions & Answers
Friends,
I need help with the following in UNIX.
Merge all csv files in one folder considering only 1 header row and ignoring header of all other files.
FYI - All files are in same format and contains same headers.
Thank you (4 Replies)
Discussion started by: Shiny_Roy
4 Replies
7. Shell Programming and Scripting
Hi Folks,
I have a file like:
mainfile.txt:
-------------
file1 abc def xyz
file1 aaa pqr xyz
file2 lmn ghi xyz
file2 bbb tuv xyz
I need output having two files file1 and file2.
file1:
------
Name State Country
abc def xyz
aaa pqr xyz
file2: (3 Replies)
Discussion started by: tanmay.gemini
3 Replies
8. Shell Programming and Scripting
Hello all,
I have a csv with with different testcase values in column 5.
year,min,max,Instrument,Testcase
2016,201,1003,GEOTROPH-02116,TATA7980
2016,53,1011,GEOTROPH-01963,TATA7980
2016,3,1024,GEOTROPH-02067,TATA7980
2016,203,1027,GEOTROPH-02011,TATA7980... (16 Replies)
Discussion started by: senhia83
16 Replies
9. UNIX for Beginners Questions & Answers
Hello all,
I have searched high and low for a solution to this, many have come really close but not quite what I'm after.
I have 2 files. One contains GUID's, for example:
8121E002-96FE-4C9C-BC5A-6AFF20DACECD
84468F30-F3B7-418B-81F0-0908E80792BF
A second file, contains a path to the... (8 Replies)
Discussion started by: tirmUK
8 Replies
10. Shell Programming and Scripting
Split large xml into mutiple files and with header and footer in file
tried below
it splits unevenly and also i need help in adding header and footer
command :
csplit -s -k -f my_XML_split.xml extrfile.xml "/<Document>/" {1}
sample xml
<?xml version="1.0" encoding="UTF-8"?><Recipient>... (36 Replies)
Discussion started by: karthik
36 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)
NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS
-C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)