Blocks into table Post: 302880432

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

select values from db1 table and insert into table of DB2

Hi I am having three oracle databases running in three different machine. their ip address is different. from one of the DB am able to access both the databases.(means am able to select values and insert values in to tables individually.) I need to fetch some data from DB1 table(say DB1 ip is...

2. UNIX and Linux Applications

create table via stored procedure (passing the table name to it)

hi there, I am trying to create a stored procedure that i can pass the table name to and it will create a table with that name. but for some reason it creates with what i have defined as the variable name . In the case of the example below it creates a table called 'tname' for example ...

3. UNIX for Dummies Questions & Answers

Convert 512-blocks to 4k blocks

I'm Unix. I'm looking at "df" on Unix now and below is an example. It's lists the filesystems out in 512-blocks, I need this in 4k blocks. Is there a way to do this in Unix or do I manually convert and how? So for container 1 there is 7,340,032 in size in 512-blocks. What would the 4k block be...

4. Shell Programming and Scripting

how to split this file into blocks and then send these blocks as input to the tool called Yices?

Hello, I have a file like this: FILE.TXT: (define argc :: int) (assert ( > argc 1)) (assert ( = argc 1)) <check> # (define c :: float) (assert ( > c 0)) (assert ( = c 0)) <check> # now, i want to separate each block('#' is the delimeter), make them separate files, and then send them as...

5. UNIX for Dummies Questions & Answers

Creating a condensed table from a pre-existing table in putty

Hello, I'm working with putty on Windows 7 professional and I'd like to know if there's a way to gather specific lines from a pre-existing table and make a new table with that information. More specifically, I'd like the program to look at a specific column, say column N, and see if any of the...

6. Shell Programming and Scripting

Build a table from a list by comparing existing table entries

I am new to this shell scripting.... I have a file which contains list of users. This files get updated when new user comes into the system. I want to create script which will give a table containing unique list of users. When I say unique, it means script should match table while parsing...

7. Shell Programming and Scripting

Row blocks to column blocks

Hello, Searched for a while and found some "line-to-column" script. My case is similar but with multiple fields each row: S02 Length Per S02 7043 3.864 S02 54477 29.89 S02 104841 57.52 S03 Length Per S03 1150 0.835 S03 1321 0.96 S03 ...

8. UNIX and Linux Applications

Help in copying table structure to another table with constraints in Oracle

hi, i need to copy one table with data into another table, right now am using create table table1 as select * from table2 i want the constraints of table1 to be copied to table2 also , can anyone give me some solution to copy the constraints also, now am using oracle 10.2.0.3.0...

9. Shell Programming and Scripting

awk to convert table-by-row to matrix table

Hello, I need some help to reformat this table-by-row to matrix? infile: site1 A:o,p,q,r,s,t site1 C:y,u site1 T:v,w site1 -:x,z site2 A:p,r,t,v,w,z site2 C:u,y site2 G:q,s site2 -:o,x site3 A:o,q,s,t,u,z site3 C:y site3 T:v,w,x site3 -:p,routfile: SITE o p q r s t v u w x y...

10. Web Development

Getting Rid of Annoying Bootstrap Table Borders and Wayward Table Lines

Bootstrap is great; but we have had some issues with Bootstrapped <tables> (and legacy <fieldset> elements) showing annoying, wayward lines. I solved that problem today with this simple jQuery in the footer: <script> $(function(){ $('tr, td, fieldset,...

LEARN ABOUT DEBIAN

hhconsensus

HHCONSENSUS(1)							   User Commands						    HHCONSENSUS(1)

NAME

       hhconsensus - calculate the consensus sequence for an A3M/FASTA input file

SYNOPSIS

       hhconsensus -i <file> [options]

DESCRIPTION

       HHconsensus  version  2.0.15  (June 2012) Calculate the consensus sequence for an A3M/FASTA input file.	(C) Johannes Soeding, Michael Rem-
       mert, Andreas Biegert, Andreas Hauser Remmert M, Biegert A, Hauser A, and Soding J.  HHblits:  Lightning-fast  iterative  protein  sequence
       searching by HMM-HMM alignment.	Nat. Methods 9:173-175 (2011).

       -i <file>
	      query alignment (A2M, A3M, or FASTA), or query HMM

   Output options:
       -s <file>
	      append consensus sequence in FASTA (default=<infile.seq>)

       -o <file>
	      write alignment with consensus sequence in A3M

       -oa3m <file>
	      same

       -oa2m <file>
	      write alignment with consensus sequence in A2M

       -ofas <file>
	      write alignment with consensus sequence in FASTA

       -v <int>
	      verbose mode: 0:no screen output	1:only warings	2: verbose

   Filter input alignment (options can be combined):
       -id    [0,100] maximum pairwise sequence identity (%) (def=100)

       -diff [0,inf[ filter most diverse set of sequences, keeping at least this

	      many sequences in each block of >50 columns (def=0)

       -cov   [0,100] minimum coverage with query (%) (def=0)

       -qid   [0,100] minimum sequence identity with query (%) (def=0)

       -qsc   [0,100] minimum score per column with query  (def=-20.0)

   Input alignment format:
       -M a2m use A2M/A3M (default): upper case = Match; lower case = Insert; '-' = Delete; '.' = gaps aligned to inserts (may be omitted)

       -M first
	      use FASTA: columns with residue in 1st sequence are match states

       -M [0,100]
	      use FASTA: columns with fewer than X% gaps are match states

   Other options:
       -addss add predicted secondary structure information from PSIPRED

       Example: hhconsensus -i stdin -s stdout

hhconsensus 2.0.15						     June 2012							    HHCONSENSUS(1)